2.1.1

What's Changed

• Fix UTF-8 encoding issues in file operations to prevent Windows crashes and add Windows CI testing by @Copilot in #139
• Create version 2.1.1 by @johnbradley in #140

Full Changelog: 2.1.0...2.1.1

2.1.0

What's Changed

• Add GitHub Copilot instructions for pybioclip development workflow by @Copilot in #127
• Add batch size option to bioclip embed command by @Copilot in #125
• Update docs fine-tune -> lightweight classifiers by @johnbradley in #130
• Fix Colab TypeError when using datasets library with sklearn models by @Copilot in #129
• Add comprehensive HF_TOKEN setup instructions to notebooks that download HuggingFace datasets by @Copilot in #132
• Create version 2.1.0 by @johnbradley in #137

New Contributors

• @Copilot made their first contribution in #127

Full Changelog: 2.0.0...2.1.0

2.0.0

What's Changed

• Switch to bioclip-2 model by @johnbradley in #114
• Fix LICENSE year by @johnbradley in #115
• Add --version cli argument by @johnbradley in #119
• Add option to record prediction logs by @johnbradley in #118
• Configure PyPI Trusted Publisher by @johnbradley in #120
• Create version 2.0.0 by @johnbradley in #121

Full Changelog: 1.3.3...2.0.0

1.3.3

What's Changed

• Update citation for version 1.3.2 by @johnbradley in #105
• Fix cli tutorial by @johnbradley in #107
• fetch text embeddings from dataset repo by @egrace479 in #109
• Create version 1.3.3 by @johnbradley in #110

New Contributors

• @egrace479 made their first contribution in #109

Full Changelog: 1.3.2...1.3.3

1.3.2

What's Changed

• Create tutorial using GBIF list of Hawaiian birds to aid prediction by @thompsonmj in #86
• Add ommitted geojson example file by @thompsonmj in #97
• Add Fine-tune Simpleshot example notebook by @johnbradley in #82
• Require python3.10+ for pybioclip and add matrix based tests with python versions by @smenon8 in #100
• Fix mkdocs generation - python version by @johnbradley in #103
• Add comparison of methods to Fine-tune docs by @johnbradley in #98
• Update version to 1.3.2 by @johnbradley in #104

New Contributors

• @thompsonmj made their first contribution in #86
• @smenon8 made their first contribution in #100

Full Changelog: 1.3.1...1.3.2

1.3.1

What's Changed

• Fix commit url for 1.3.0 by @johnbradley in #90
• Use apptainer 1.3.6 for container building by @johnbradley in #92
• Fix pil batching bug by @johnbradley in #94
• Update version to 1.3.1 by @johnbradley in #95

Full Changelog: 1.3.0...1.3.1

1.3.0

What's Changed

• Fix .zenodo.json and add test by @johnbradley in #75
• Add Fine-tune SVM example notebook by @johnbradley in #78
• Add Fine-tune RidgeClassifier example notebook by @johnbradley in #79
• Fix grouping performance bug by @johnbradley in #85
• Add batch_size parameter for predict() and cli by @johnbradley in #83
• Fix subsetting range bug by @johnbradley in #88
• Create version 1.3.0 by @johnbradley in #89

Full Changelog: 1.2.0...1.3.0

1.2.0

What's Changed

• Create publish-to-pypi.yml by @johnbradley in #48
• Fix .zenodo.json by @johnbradley in #51
• Citation 1.1.0 by @johnbradley in #49
• Add binning to custom label prediction by @johnbradley in #53
• Allow using PIL with predict functions by @johnbradley in #55
• Allow subsetting TOL classifier by @johnbradley in #59
• Add mkdocs documentation by @johnbradley in #66
• Add changes to work better with pytorch-grad-cam by @johnbradley in #64
• Improve Acknowledgments by @johnbradley in #70
• Add --subset argument to predict command by @johnbradley in #63
• Improve Docker and Acknowledgments Documentation by @johnbradley in #72
• Create version 1.2.0 by @johnbradley in #73

Full Changelog: 1.1.0...1.2.0

Version 1.1.0

What's Changed

• Update notebooks pip commands by @johnbradley in #22
• Makes synopsis in the README more descriptive by @hlapp in #24
• Allows specifying top k results for custom class list by @hlapp in #31
• Adds ability to provide other OpenCLIP models and checkpoints by @hlapp in #33
• Create CITATION.cff by @johnbradley in #25
• Add automated testing config by @johnbradley in #36
• Add --cls-file to predict command by @johnbradley in #37
• Enable torch.load weights_only=True by @johnbradley in #38
• Adds Dockerfile + release container building by @johnbradley in #40
• Add README link to custom model documentation by @johnbradley in #42
• Add apptainer support by @johnbradley in #41
• Update container README links and fix Apptainer push by @johnbradley in #44
• Update version to 1.1.0 by @johnbradley in #46

Full Changelog: 1.0.0...1.1.0

Initial Release

What's Changed

• Add bioclip command line tool by @johnbradley in #3
• Improve performance and prediction results by @johnbradley in #8
• Add device parameter and examples by @johnbradley in #9
• Add embed command by @johnbradley in #10
• Fix for RGBA png files by @johnbradley in #13
• Avoid recomputing text embeddings for custom labels by @johnbradley in #16
• Allow batch processing of images by @johnbradley in #18
• Prep to release on pypi by @johnbradley in #19
• Fixes badges to use the correct package name by @hlapp in #21

Full Changelog: https://github.com/Imageomics/pybioclip/commits/1.0.0