Skip to content

Commit

Permalink
Merge pull request #3 from apdavison/master
Browse files Browse the repository at this point in the history 
Larger network size for Brunel (2000) model; adjust weight parameters…
  • Loading branch information
@tclose
tclose committed Jan 3, 2016
2 parents d95666b + 426e239 commit 2da3c9e
Show file tree
Hide file tree
Showing 4 changed files with 41 additions and 40 deletions.
20 changes: 10 additions & 10 deletions xml/network/Brunel2000/AI.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
</Selection>
<Dimension name="per_time" t="-1"/>
<Population name="Exc">
<Size>4000</Size>
<Size>10000</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -61,7 +61,7 @@
<Component name="RandomExc">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>400</SingleValue>
<SingleValue>1000</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -84,7 +84,7 @@
<Component name="ExcitatoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -98,18 +98,18 @@
<Dimension i="-2" l="2" m="1" t="-3" name="resistance"/>
<Dimension i="1" name="current"/>
<Population name="Ext">
<Size>5000</Size>
<Size>12500</Size>
<Cell>
<Component name="stim">
<Definition url="../../input/Poisson.xml">Poisson</Definition>
<Property units="Hz" name="rate">
<SingleValue>20000.0</SingleValue>
<SingleValue>19364.6975077</SingleValue>
</Property>
<Initial units="ms" name="t_next">
<Component name="exponential_beta">
<Definition url="../../randomdistribution/Exponential.xml">ExponentialDistribution</Definition>
<Property units="unitless" name="rate">
<SingleValue>0.05</SingleValue>
<SingleValue>19364.6975077</SingleValue>
</Property>
</Component>
</Initial>
Expand All @@ -128,7 +128,7 @@
<Component name="RandomInh">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>100</SingleValue>
<SingleValue>250</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -151,7 +151,7 @@
<Component name="InhibitoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>-12.0</SingleValue>
<SingleValue>-68.8538167356</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -160,7 +160,7 @@
</Delay>
</Projection>
<Population name="Inh">
<Size>1000</Size>
<Size>2500</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -228,7 +228,7 @@
<Component name="ExternalPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand Down
20 changes: 10 additions & 10 deletions xml/network/Brunel2000/SIfast.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
</Selection>
<Dimension name="per_time" t="-1"/>
<Population name="Exc">
<Size>4000</Size>
<Size>10000</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -61,7 +61,7 @@
<Component name="RandomExc">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>400</SingleValue>
<SingleValue>1000</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -84,7 +84,7 @@
<Component name="ExcitatoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -98,18 +98,18 @@
<Dimension i="-2" l="2" m="1" t="-3" name="resistance"/>
<Dimension i="1" name="current"/>
<Population name="Ext">
<Size>5000</Size>
<Size>12500</Size>
<Cell>
<Component name="stim">
<Definition url="../../input/Poisson.xml">Poisson</Definition>
<Property units="Hz" name="rate">
<SingleValue>40000.0</SingleValue>
<SingleValue>38729.3950153</SingleValue>
</Property>
<Initial units="ms" name="t_next">
<Component name="exponential_beta">
<Definition url="../../randomdistribution/Exponential.xml">ExponentialDistribution</Definition>
<Property units="unitless" name="rate">
<SingleValue>0.025</SingleValue>
<SingleValue>38729.3950153</SingleValue>
</Property>
</Component>
</Initial>
Expand All @@ -128,7 +128,7 @@
<Component name="RandomInh">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>100</SingleValue>
<SingleValue>250</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -151,7 +151,7 @@
<Component name="InhibitoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>-14.4</SingleValue>
<SingleValue>-82.6245800828</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -160,7 +160,7 @@
</Delay>
</Projection>
<Population name="Inh">
<Size>1000</Size>
<Size>2500</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -228,7 +228,7 @@
<Component name="ExternalPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand Down
20 changes: 10 additions & 10 deletions xml/network/Brunel2000/SIslow1.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
</Selection>
<Dimension name="per_time" t="-1"/>
<Population name="Exc">
<Size>4000</Size>
<Size>10000</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -61,7 +61,7 @@
<Component name="RandomExc">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>400</SingleValue>
<SingleValue>1000</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -84,7 +84,7 @@
<Component name="ExcitatoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -98,18 +98,18 @@
<Dimension i="-2" l="2" m="1" t="-3" name="resistance"/>
<Dimension i="1" name="current"/>
<Population name="Ext">
<Size>5000</Size>
<Size>12500</Size>
<Cell>
<Component name="stim">
<Definition url="../../input/Poisson.xml">Poisson</Definition>
<Property units="Hz" name="rate">
<SingleValue>9000.0</SingleValue>
<SingleValue>9198.23131614</SingleValue>
</Property>
<Initial units="ms" name="t_next">
<Component name="exponential_beta">
<Definition url="../../randomdistribution/Exponential.xml">ExponentialDistribution</Definition>
<Property units="unitless" name="rate">
<SingleValue>0.111111111111</SingleValue>
<SingleValue>9198.23131614</SingleValue>
</Property>
</Component>
</Initial>
Expand All @@ -128,7 +128,7 @@
<Component name="RandomInh">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>100</SingleValue>
<SingleValue>250</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -151,7 +151,7 @@
<Component name="InhibitoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>-10.8</SingleValue>
<SingleValue>-61.9684350621</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -160,7 +160,7 @@
</Delay>
</Projection>
<Population name="Inh">
<Size>1000</Size>
<Size>2500</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -228,7 +228,7 @@
<Component name="ExternalPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand Down
21 changes: 11 additions & 10 deletions xml/network/Brunel2000/SR.xml
View file
Original file line number Diff line number Diff line change
Expand Up @@ -13,7 +13,7 @@
</Selection>
<Dimension name="per_time" t="-1"/>
<Population name="Exc">
<Size>4000</Size>
<Size>10000</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -61,7 +61,7 @@
<Component name="RandomExc">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>400.0</SingleValue>
<SingleValue>1000</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -84,7 +84,7 @@
<Component name="ExcitatoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -93,22 +93,23 @@
</Delay>
</Projection>
<Unit symbol="nA" dimension="current" power="-9"/>
<Unit symbol="mV" dimension="voltage" power="-3"/>
<Dimension i="-1" l="2" m="1" t="-3" name="voltage"/>
<Dimension i="-2" l="2" m="1" t="-3" name="resistance"/>
<Dimension i="1" name="current"/>
<Population name="Ext">
<Size>5000</Size>
<Size>12500</Size>
<Cell>
<Component name="stim">
<Definition url="../../input/Poisson.xml">Poisson</Definition>
<Property units="Hz" name="rate">
<SingleValue>20000.0</SingleValue>
<SingleValue>19364.6975077</SingleValue>
</Property>
<Initial units="ms" name="t_next">
<Component name="exponential_beta">
<Definition url="../../randomdistribution/Exponential.xml">ExponentialDistribution</Definition>
<Property units="unitless" name="rate">
<SingleValue>0.05</SingleValue>
<SingleValue>19364.6975077</SingleValue>
</Property>
</Component>
</Initial>
Expand All @@ -117,7 +118,7 @@
</Population>
<Unit symbol="mV" dimension="voltage" power="-3"/>
<Population name="Inh">
<Size>1000</Size>
<Size>2500</Size>
<Cell>
<Component name="nrn">
<Definition url="../../neuron/LeakyIntegrateAndFire.xml">LeakyIntegrateAndFire</Definition>
Expand Down Expand Up @@ -185,7 +186,7 @@
<Component name="ExternalPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>2.4</SingleValue>
<SingleValue>13.7707633471</SingleValue>
</Property>
</Component>
</Plasticity>
Expand All @@ -209,7 +210,7 @@
<Component name="RandomInh">
<Definition url="../../connectionrule/RandomFanIn.xml">RandomFanIn</Definition>
<Property units="unitless" name="number">
<SingleValue>100.0</SingleValue>
<SingleValue>1000.0</SingleValue>
</Property>
</Component>
</Connectivity>
Expand All @@ -232,7 +233,7 @@
<Component name="InhibitoryPlasticity">
<Definition url="../../plasticity/Static.xml">Static</Definition>
<Property units="nA" name="weight">
<SingleValue>-7.2</SingleValue>
<SingleValue>-41.3122900414</SingleValue>
</Property>
</Component>
</Plasticity>
Expand Down

0 comments on commit 2da3c9e

Please sign in to comment.