v1.0 public release

.gitignore

@@ -0,0 +1,23 @@
+bin/*
+*.o
+build/*
+*/build/*
+*/*.xcodeproj/* !*.xcodeproj/project.pbxproj
+*.xcodeproj
+.svn
+
+.DS_Store
+profile
+
+#Stuff for ignoring automake/autoconf files!
+Makefile
+*.m4
+config.*
+configure
+*.in
+missing
+install-sh
+depcomp
+stamp-h1
+*.cache/*
+src/.*

LICENSE

@@ -0,0 +1,24 @@
+This is free and unencumbered software released into the public domain.
+
+Anyone is free to copy, modify, publish, use, compile, sell, or
+distribute this software, either in source code form or as a compiled
+binary, for any purpose, commercial or non-commercial, and by any
+means.
+
+In jurisdictions that recognize copyright laws, the author or authors
+of this software dedicate any and all copyright interest in the
+software to the public domain. We make this dedication for the benefit
+of the public at large and to the detriment of our heirs and
+successors. We intend this dedication to be an overt act of
+relinquishment in perpetuity of all present and future rights to this
+software under copyright law.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND,
+EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF
+MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT.
+IN NO EVENT SHALL THE AUTHORS BE LIABLE FOR ANY CLAIM, DAMAGES OR
+OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE,
+ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR
+OTHER DEALINGS IN THE SOFTWARE.
+
+For more information, please refer to <http://unlicense.org>

Makefile.am

@@ -0,0 +1,25 @@
+AUTOMAKE_OPTIONS = subdir-objects
+ACLOCAL_AMFLAGS = ${ACLOCAL_FLAGS}
+
+.rc.o:
+	$(WINDRES) src/ef5.rc -o $@
+%.o : %.rc
+	$(WINDRES) src/ef5.rc -o $@
+
+bin_PROGRAMS = $(top_builddir)/bin/ef5
+unit_FILES = src/LAEAProjection.cpp src/GeographicProjection.cpp src/DistanceUnit.cpp src/TimeUnit.cpp src/DistancePerTimeUnits.cpp src/TimeVar.cpp
+type_FILES = src/DatedName.cpp src/PETType.cpp src/PrecipType.cpp src/TempType.cpp src/GaugeMap.cpp
+config_FILES = src/BasicConfigSection.cpp src/PrecipConfigSection.cpp src/PETConfigSection.cpp src/TempConfigSection.cpp src/GaugeConfigSection.cpp src/BasinConfigSection.cpp src/CaliParamConfigSection.cpp src/ParamSetConfigSection.cpp src/RoutingCaliParamConfigSection.cpp src/RoutingParamSetConfigSection.cpp src/TaskConfigSection.cpp src/EnsTaskConfigSection.cpp src/ExecuteConfigSection.cpp src/Config.cpp src/SnowCaliParamConfigSection.cpp src/SnowParamSetConfigSection.cpp src/InundationCaliParamConfigSection.cpp src/InundationParamSetConfigSection.cpp
+input_FILES = src/RPSkewness.cpp src/TimeSeries.cpp src/PETReader.cpp src/PrecipReader.cpp src/TempReader.cpp src/TifGrid.cpp src/BifGrid.cpp src/AscGrid.cpp src/BasicGrids.cpp src/TRMMRTGrid.cpp src/MRMSGrid.cpp src/GridWriter.cpp src/GridWriterFull.cpp src/GriddedOutput.cpp
+model_FILES = src/Model.cpp src/CRESTModel.cpp src/HyMOD.cpp src/SAC.cpp src/LinearRoute.cpp src/KinematicRoute.cpp src/ObjectiveFunc.cpp src/Simulator.cpp src/ARS.cpp src/DREAM.cpp src/dream_functions.cpp src/misc_functions.cpp src/Snow17Model.cpp src/HPModel.cpp src/SimpleInundation.cpp src/VCInundation.cpp
+if WINDOWS
+AM_CXXFLAGS= -Wall -mwindows ${OPENMP_CFLAGS} -fopenmp
+__top_builddir__bin_ef5_SOURCES = $(unit_FILES) $(type_FILES) $(config_FILES) $(input_FILES) $(model_FILES) src/ExecutionController.cpp src/EF5Windows.cpp src/ef5.rc
+else
+AM_CXXFLAGS= -Wall -Werror ${OPENMP_CFLAGS}
+__top_builddir__bin_ef5_SOURCES = $(unit_FILES) $(type_FILES) $(config_FILES) $(input_FILES) $(model_FILES) src/ExecutionController.cpp src/EF5.cpp src/DEMProcessor.cpp
+endif
+__top_builddir__bin_ef5_LDADD=-ltiff -lgeotiff -lz -lgomp
+
+EXTRA_PROGRAMS = $(top_builddir)/bin/kwtest
+__top_builddir__bin_kwtest_SOURCES = $(unit_FILES) $(type_FILES) $(config_FILES) $(input_FILES) $(model_FILES) src/KWTest.cpp

README.md

@@ -0,0 +1,57 @@
+# Ensemble Framework For Flash Flood Forecasting (EF5)
+
+EF5 was created by the Hydrometeorology and Remote Sensing Laboratory at the University of Oklahoma.
+The goal of EF5 is to have a framework for distributed hydrologic modeling that is user friendly, adaptable, expandable, all while being suitable for large scale (e.g. continental scale) modeling of flash floods with rapid forecast updates. Currently EF5 incorporates 3 water balance models including the Sacramento Soil Moisture Accouning Model (SAC-SMA), Coupled Routing and Excess Storage (CREST), and hydrophobic (HP). These water balance models can be coupled with either linear reservoir or kinematic wave routing. 
+
+## Learn More
+
+EF5 has a homepage at [http://ef5.ou.edu](http://ef5.ou.edu). The training modules are found at [http://ef5.ou.edu/training/](http://ef5.ou.edu/training/) while the YouTube videos may be found at [https://www.youtube.com/channel/UCgoGJtdeqHgwoYIRhkgMwog](https://www.youtube.com/channel/UCgoGJtdeqHgwoYIRhkgMwog). The source code is found on GitHub at [https://github.com/HyDROSLab/EF5](https://github.com/HyDROSLab/EF5).
+
+See [manual.html](manual.html) for the EF5 operating manual which describes configuration options.
+
+## Compiling
+
+### Linux
+
+Clone the source code from GitHub.
+1. autoreconf --force --install
+2. ./configure
+
+This sets up the system, if you have a path where you would like to install the files then use ./configure --prefix=/path/to/someplace
+
+3. make
+   This compiles the EF5 application!
+
+### OS X
+
+Clone the source code from GitHub. Use the EF5 Xcode project found in the EF5 folder and compile the project.
+
+### Windows
+
+Currently cross-compiling from Linux is the recommended way of generating Windows binaries.
+
+Clone the source code from GitHub.
+
+1. autoreconf --force --install
+2. For 32-bit Windows installations use ./configure --host=i686-w64-mingw32
+
+   For 64-bit Windows installations use ./configure --host=x86_64-w64-mingw32
+
+3. make
+
+   This compiles the EF5 application!
+
+## Contributors
+
+The following people are acknowledged for their contributions to the creation of EF5.
+
+Zac Flamig
+
+Humberto Vergara
+
+Race Clark
+
+JJ Gourley
+
+Yang Hong
+

compile_trmm_tools.csh

@@ -0,0 +1,9 @@
+#!/bin/csh
+
+g++ -O3 -o bin/TRMMRTClip src/TRMMRTClip.cpp src/TRMMRTGrid.cpp src/AscGrid.cpp -lz
+g++ -O3 -o bin/TRMMDClip src/TRMMDClip.cpp src/TRMMDGrid.cpp src/AscGrid.cpp -lz
+g++ -O3 -o bin/TRMMV6Clip src/TRMMV6Clip.cpp src/TRMMV6Grid.cpp src/AscGrid.cpp /usr/lib64/hdf/libmfhdf.a /usr/lib64/hdf/libdf.a -lz -ljpeg
+g++ -O3 -o bin/BIFClip src/BIFClip.cpp src/BifGrid.cpp src/AscGrid.cpp
+g++ -O3 -o bin/MRMSConvert src/MRMSConvert.cpp src/TifGrid.cpp src/MRMSGrid.cpp -lz -ltiff -lgeotiff
+g++ -g -O3 -o bin/MRMSSum src/MRMSSum.cpp src/TifGrid.cpp src/MRMSGrid.cpp -lz -ltiff -lgeotiff
+g++ -g -O3 -o bin/ComputeRP src/ComputeRP.cpp src/TifGrid.cpp -lz -ltiff -lgeotiff

configure.ac

@@ -0,0 +1,53 @@
+AC_INIT([Ensemble Framework For Flash Flood Forecasting], [0.1], [[email protected]],
+             [ef5], [http://hydro.ou.edu/])
+AC_PREREQ([2.62])
+AC_PROG_CXX
+AC_OPENMP
+AC_SUBST(OPENMP_CFLAGS)
+
+AC_CANONICAL_HOST
+case $host_os in
+    *mingw*)
+        CFLAGS="$CFLAGS -static -static-libgcc -I/usr/local/include"
+        CXXFLAGS="$CXXFLAGS -static -static-libgcc -I/usr/local/include"
+        LDFLAGS="$LDFLAGS -static -static-libgcc -L/usr/local/lib"
+	WINDOWS=yes
+	AC_CHECK_TOOL(WINDRES, windres, no)	
+        ;;
+     *)
+	;;
+esac
+AM_CONDITIONAL(WINDOWS, test x$WINDOWS = xyes)
+#AC_CHECK_LIB([z], [gzread], [],[
+#         echo "z library is required for this EF5"
+#         exit -1])
+#AC_CHECK_LIB([tiff], [TIFFReadScanline], [],[
+#         echo "Tiff library is required for this EF5"
+#         exit -1])
+#AC_CHECK_LIB([geotiff], [GTIFNew], [],[
+#         echo "GeoTiff library is required for this EF5"
+#         exit -1])
+#if test x$WINDOWS != xyes; then
+#AC_CHECK_LIB([gomp], [omp_get_wtime], [],[
+#         echo "gomp library is required for this EF5"
+#         exit -1])
+#fi;
+LIBS=-lz -ltiff -lgeotiff
+AC_CHECK_HEADERS(xtiffio.h)
+AC_CHECK_HEADERS(geotiff/xtiffio.h)
+AC_CHECK_HEADERS(libgeotiff/xtiffio.h)
+if test x"$ac_cv_header_geotiff_xtiffio_h" = x"yes"; then
+        CPPFLAGS="-I/usr/include/geotiff";
+else
+        if test x"$ac_cv_header_libgeotiff_xtiffio_h" = x"yes"; then
+                CPPFLAGS="-I/usr/include/libgeotiff";
+        else
+                if test x"$ac_cv_header_xtiffio_h" != x"yes"; then
+                        AC_MSG_ERROR([xtiffio.h header not found]);
+                fi;
+        fi;
+fi;
+AM_INIT_AUTOMAKE([1.9.6 -Wall -Werror no-define foreign])
+AC_CONFIG_HEADERS([config.h])
+AC_CONFIG_FILES([Makefile])
+AC_OUTPUT