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HighlanderLab

Software for the management and improvement of populations using data science, genetics, and breeding

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  1. jbancic_alphasimr_plants jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HTML 17 11

  2. EUCARPIA2025BiometricsPlantBreeding EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    Ruby 5 2

  3. RandPedPCA RandPedPCA Public

    Principal Component Analysis of Pedigree Relationship Matrix via Randomized SVD

    Jupyter Notebook 5 2

  4. jbancic_GEIsim jbancic_GEIsim Public

    This repository contains examples of code for simulating genotype by environment interaction

    R 4 1

  5. tree_seq_pipeline tree_seq_pipeline Public

    Pipeline to infer tree sequences with different datasets

    Python 3 7

  6. gmafrafortuna_mtdna_breed gmafrafortuna_mtdna_breed Public

    Accounting for nuclear - and mito-genome in dairy cattle breeding: a simulation study

    R 2

Repositories

Showing 10 of 56 repositories
  • AlphaPhase Public Forked from AlphaGenes/AlphaPhase
    HighlanderLab/AlphaPhase’s past year of commit activity
    Fortran 0 MIT 2 0 0 Updated Apr 2, 2025
  • EUCARPIA2025BiometricsPlantBreeding Public

    This is a repository hosting public information about the EUCARPIA 2025 Biometrics in Plant Breeding in Edinburgh 17-19th September 2025 + Satellite workshop 15-16th September

    HighlanderLab/EUCARPIA2025BiometricsPlantBreeding’s past year of commit activity
    Ruby 5 2 1 0 Updated Mar 31, 2025
  • RandPedPCA Public

    Principal Component Analysis of Pedigree Relationship Matrix via Randomized SVD

    HighlanderLab/RandPedPCA’s past year of commit activity
    Jupyter Notebook 5 2 3 0 Updated Mar 19, 2025
  • vpapin_pine_gs Public archive

    Simulation of genomic prediction in maritime pine and factors affecting its accuracy

    HighlanderLab/vpapin_pine_gs’s past year of commit activity
    R 0 1 0 0 Updated Mar 7, 2025
  • AlphaPart Public Forked from AlphaGenes/AlphaPart

    AlphaPart implements a method for partitioning genetic trends to quantify the sources of genetic gain in breeding programmes

    HighlanderLab/AlphaPart’s past year of commit activity
    R 0 3 0 0 Updated Feb 23, 2025
  • svanvanhossou_africross Public Forked from SeyiV/Simulation_Crossbreeding
    HighlanderLab/svanvanhossou_africross’s past year of commit activity
    R 0 1 0 0 Updated Feb 20, 2025
  • AlphaSimR Public Forked from gaynorr/AlphaSimR

    R package for breeding program simulations

    HighlanderLab/AlphaSimR’s past year of commit activity
    R 0 21 0 0 Updated Jan 25, 2025
  • AlphaImpute2 Public Forked from AlphaGenes/AlphaImpute2

    AlphaImpute2: pedigree- and population-based genotype imputation

    HighlanderLab/AlphaImpute2’s past year of commit activity
    Python 0 MIT 7 0 0 Updated Jan 23, 2025
  • jbancic_alphasimr_plants Public

    Plant breeding simulations with AlphaSimR

    HighlanderLab/jbancic_alphasimr_plants’s past year of commit activity
    HTML 17 11 1 0 Updated Jan 5, 2025
  • SIMplyBee Public

    SIMplyBee R package extends AlphaSimR for simulating honeybee populations and breeding programmes

    HighlanderLab/SIMplyBee’s past year of commit activity
    R 2 6 68 0 Updated Dec 16, 2024
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