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include data in vignette
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tuner committed Jan 14, 2025
1 parent 3bf41ea commit 43f043a
Showing 1 changed file with 11 additions and 6 deletions.
17 changes: 11 additions & 6 deletions vignettes/introduction.Rmd
Original file line number Diff line number Diff line change
Expand Up @@ -18,12 +18,6 @@ knitr::opts_chunk$set(
library(jellyfisher)
```

```{r echo=F, message=F}
# Subset the data to keep the compiled vignette a bit smaller
jellyfisher_example_tables <- jellyfisher_example_tables |>
select_patients(c("EOC69", "EOC677", "EOC495", "EOC809"))
```

**Jellyfisher** is an R package (a [htmlwidget](https://www.htmlwidgets.org/))
for visualizing tumor evolution and subclonal compositions using Jellyfish plots.
The package is based on the
Expand All @@ -44,6 +38,17 @@ trajectories characterized by distinct pathways stratify patients with ovarian
high-grade serous carcinoma." _Cancer Cell_ **41**, 1103–1117.e12 (2023). DOI:
[10.1016/j.ccell.2023.04.017](https://doi.org/10.1016/j.ccell.2023.04.017).

```{r}
data(jellyfisher_example_tables)
```

```{r echo=F, message=F}
# Subset the data to keep the compiled vignette a bit smaller
jellyfisher_example_tables <- jellyfisher_example_tables |>
select_patients(c("EOC69", "EOC677", "EOC495", "EOC809"))
```


### Samples
- `sample` (string): specifies the unique identifier for each sample.
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