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Updates, getting started on documentation #13

Updates, getting started on documentation

Updates, getting started on documentation #13

Triggered via push October 5, 2024 17:17
Status Success
Total duration 1m 54s
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Matrix: test
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12 warnings
Julia 1 - ubuntu-latest - x64 - push
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Julia 1.9 - ubuntu-latest - x64 - push
Codecov: Failed to properly create commit: The process '/home/runner/work/_actions/codecov/codecov-action/v4/dist/codecov' failed with exit code 1
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
undefined binding 'RegionTilt' in `@docs` block in src/regiongrids.md:42-45 ```@docs RegionMask RegionTilt ```
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:7-17 ```@example regiongrid using GeoRegions using DelimitedFiles using CairoMakie download("https://raw.githubusercontent.com/natgeo-wong/GeoPlottingData/main/coastline_resl.txt","coast.cst") coast = readdlm("coast.cst",comments=true) clon = coast[:,1] clat = coast[:,2] nothing ``` exception = ArgumentError: Package CairoMakie not found in current path. - Run `import Pkg; Pkg.add("CairoMakie")` to install the CairoMakie package. Stacktrace: [1] macro expansion @ ./loading.jl:1772 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1753 [4] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [5] invoke_in_world @ ./essentials.jl:923 [inlined] [6] require(into::Module, mod::Symbol) @ Base ./loading.jl:1746 [7] eval @ ./boot.jl:385 [inlined] [8] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [9] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [10] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [12] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [13] with_logger @ ./logging.jl:627 [inlined] [14] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:21-26 ```@example regiongrid geo = GeoRegion("GF_SSA") lon = -180:5:180 lat = -90:5:90 ggrd = RegionGrid(geo,lon[1:(end-1)],lat) ``` exception = UndefVarError: `RegionGrid` not defined Stacktrace: [1] top-level scope @ create.md:25 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:30-35 ```@example regiongrid geo = GeoRegion("AR6_NWS") lon = -180:2:180; lat = -90:2:90; ggrd = RegionGrid(geo,lon[1:(end-1)],lat) ``` exception = UndefVarError: `RegionGrid` not defined Stacktrace: [1] top-level scope @ create.md:34 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:39-41 ```@example regiongrid ggrd.mask ``` exception = UndefVarError: `ggrd` not defined Stacktrace: [1] top-level scope @ :0 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:47-52 ```@example regiongrid geo = GeoRegion("AR6_SAS") lon = -180:5:180; lat = -90:2:90; ggrd = RegionGrid(geo,lon[1:(end-1)],lat) ``` exception = UndefVarError: `RegionGrid` not defined Stacktrace: [1] top-level scope @ create.md:51 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/regiongrids/create.md:56-80 ```@example regiongrid mask = ggrd.mask grid = ones(size(mask)) inlon = grid .* ggrd.lon; inlon = inlon[.!isnan.(mask)] inlat = grid .* ggrd.lat'; inlat = inlat[.!isnan.(mask)] otlon = grid .* ggrd.lon; otlon = otlon[isnan.(mask)] otlat = grid .* ggrd.lat'; otlat = otlat[isnan.(mask)] blon,blat,slon,slat = coordGeoRegion(geo) fig = Figure() aspect = (maximum(slon)-minimum(slon))/(maximum(slat)-minimum(slat)) ax = Axis( fig[1,1],width=750,height=750/aspect, limits=(minimum(slon)-2,maximum(slon)+2,minimum(slat)-2,maximum(slat)+2) ) lines!(ax,clon,clat,color=:black) lines!(ax,blon,blat) lines!(ax,slon,slat) scatter!(ax,otlon,otlat) scatter!(ax,inlon,inlat) resize_to_layout!(fig) fig ``` exception = UndefVarError: `ggrd` not defined Stacktrace: [1] top-level scope @ create.md:57 [2] eval @ ./boot.jl:385 [inlined] [3] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [4] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [5] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [6] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [7] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [8] with_logger @ ./logging.jl:627 [inlined] [9] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [10] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
no docs found for 'RegionGrid(::GeoRegion,::Array{<:Real,2},::Array{<:Real,2})' in `@docs` block in src/regiongrids/create.md:84-87 ```@docs RegionGrid(::RectRegion,::Vector{<:Real},::Vector{<:Real}) RegionGrid(::GeoRegion,::Array{<:Real,2},::Array{<:Real,2}) ```
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
duplicate docs found for 'RegionGrid' in `@docs` block in src/regiongrids/intro.md:1-3 ```@docs RegionGrid ```
Documentation: ../../../.julia/packages/Documenter/C1XEF/src/utilities/utilities.jl#L46
failed to run `@example` block in src/using/extract.md:13-23 ```@example extract using GeoRegions using DelimitedFiles using CairoMakie download("https://raw.githubusercontent.com/natgeo-wong/GeoPlottingData/main/coastline_resl.txt","coast.cst") coast = readdlm("coast.cst",comments=true) clon = coast[:,1] clat = coast[:,2] nothing ``` exception = ArgumentError: Package CairoMakie not found in current path. - Run `import Pkg; Pkg.add("CairoMakie")` to install the CairoMakie package. Stacktrace: [1] macro expansion @ ./loading.jl:1772 [inlined] [2] macro expansion @ ./lock.jl:267 [inlined] [3] __require(into::Module, mod::Symbol) @ Base ./loading.jl:1753 [4] #invoke_in_world#3 @ ./essentials.jl:926 [inlined] [5] invoke_in_world @ ./essentials.jl:923 [inlined] [6] require(into::Module, mod::Symbol) @ Base ./loading.jl:1746 [7] eval @ ./boot.jl:385 [inlined] [8] #60 @ ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:754 [inlined] [9] cd(f::Documenter.var"#60#62"{Module, Expr}, dir::String) @ Base.Filesystem ./file.jl:112 [10] (::Documenter.var"#59#61"{Documenter.Page, Module, Expr})() @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:753 [11] (::IOCapture.var"#5#9"{DataType, Documenter.var"#59#61"{Documenter.Page, Module, Expr}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}, IOContext{Base.PipeEndpoint}})() @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:170 [12] with_logstate(f::Function, logstate::Any) @ Base.CoreLogging ./logging.jl:515 [13] with_logger @ ./logging.jl:627 [inlined] [14] capture(f::Documenter.var"#59#61"{Documenter.Page, Module, Expr}; rethrow::Type, color::Bool, passthrough::Bool, capture_buffer::IOBuffer, io_context::Vector{Any}) @ IOCapture ~/.julia/packages/IOCapture/Y5rEA/src/IOCapture.jl:167 [15] runner(::Type{Documenter.Expanders.ExampleBlocks}, node::MarkdownAST.Node{Nothing}, page::Documenter.Page, doc::Documenter.Document) @ Documenter ~/.julia/packages/Documenter/C1XEF/src/expander_pipeline.jl:752