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@mcgeestephen mcgeestephen released this 07 Jun 02:39
0.5.4
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Overview

This version incorporates changes to handle new column headers in the phenotype.hpoa file released for the Human Phenotype Ontology (HPO), updates dependencies, and removes certain code elements and dependencies.

What's Changed

  • Can now handle new column headers of phenotype.hpoa file from 4/6/2023 release of HPO
  • Merge pull request #92 from GeneDx/develop by @mcgeestephen
  • Bump requests from 2.25.1 to 2.31.0 by @mcgeestephen in #92
  • Removed likelihood of molecular diagnosis code by @mcgeestephen (likelihood.py, test_likelihood.py)
  • Removed likelihood_moldx module from phenopy/__main__.py
  • Removal of joblib and lightgbm dependencies by @mcgeestephen
  • Versions explicitly stated in setup.py for fire, networkx, numpy, pandas, scipy

Known Issues

  • phenopy v0.5.4 relies on Python3.7, which is expected to reach end-of-life on 2023-06-27.
  • vocab was deprecated from KeyedVector and will throw an AttributeError for applications relying on newer gensim versions (>=4.0.0)

Compatibility

Requires >= Python 3.7.

Contributors

Release Date

Version 0.5.4 was released on June 6, 2023.

Contributors

mcgeestephen
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