This is the code repository for the project "Cyclosporine A Accelerates Neurorecovery Transcriptional Trajectory in a Swine Model of Diffuse Traumatic Brain Injury"
File: Prepare_Porcine_Data.R (This script is utilized for Filtering, Normalization, and Outlier Removal)
File: Differential Expression Analysis and Visualization.R (This script is utilized for Differential Expression Analysis and Visualization)
File: WGCNA_Porcine_Analysis.R (This script is utilized for WGCNA Analysis)
Before running the code, please load WoodLabFunction under Alyssa Pybus repositories (https://github.com/afpybus/WoodLabFunctions)