Created swapping example #104

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Commits on Feb 6, 2025

Modified ATM system preparation for receptor swapping, can include two receptors now in the system

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Fixed print of atom indices of ligand 1 and ligand 2

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Commits on Apr 4, 2025

created swapping calculation of TYK2-JAK2 in examples/
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Commits on Apr 8, 2025

Merge branch 'Gallicchio-Lab:master' into master
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Removed binary files

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updated .gitignore

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Commits on Apr 9, 2025

fixed minor changes to swapping example

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Commits on Jun 4, 2025

added README.md

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Commits on Sep 25, 2025

Addressed a few more MR comments
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