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@GMOD

Generic Model Organism Database Project

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  1. Chado Chado Public

    the GMOD database schema

    PLpgSQL 41 23

  2. jbrowse-components jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    TypeScript 231 65

  3. jbrowse jbrowse Public

    JBrowse 1, a full-featured genome browser built with JavaScript and HTML5. For JBrowse 2, see https://github.com/GMOD/jbrowse-components.

    JavaScript 468 198

  4. Apollo Apollo Public

    Genome annotation editor with a Java Server backend and a Javascript client that runs in a web browser as a JBrowse plugin.

    Groovy 131 85

Repositories

Showing 10 of 104 repositories
  • 2025-biocuration-tutorial Public
    GMOD/2025-biocuration-tutorial’s past year of commit activity
    Dockerfile 1 0 0 0 Updated Apr 5, 2025
  • jbrowse-components Public

    Source code for JBrowse 2, a modern React-based genome browser

    GMOD/jbrowse-components’s past year of commit activity
    TypeScript 231 Apache-2.0 65 262 (3 issues need help) 20 Updated Apr 4, 2025
  • vcf-js Public

    High performance Variant Call Format (VCF) parser in pure JavaScript

    GMOD/vcf-js’s past year of commit activity
    TypeScript 24 MIT 5 1 1 Updated Apr 4, 2025
  • twobit-js Public

    Read .2bit files with pure JS. Works in node or webpack.

    GMOD/twobit-js’s past year of commit activity
    TypeScript 4 MIT 2 0 1 Updated Apr 4, 2025
  • nclist-js Public

    Read JBrowse v1 nested containment list feature stores from modern JS

    GMOD/nclist-js’s past year of commit activity
    TypeScript 0 MIT 0 0 1 Updated Apr 4, 2025
  • ucsc-hub-js Public

    read and write UCSC track and assembly hub files in node or the browser

    GMOD/ucsc-hub-js’s past year of commit activity
    TypeScript 5 MIT 2 5 2 Updated Apr 4, 2025
  • Apollo3 Public

    JBrowse 2 plugin for editing annotations on an Apollo server

    GMOD/Apollo3’s past year of commit activity
    TypeScript 11 Apache-2.0 4 60 5 Updated Apr 3, 2025
  • bam-js Public

    Parse BAM and BAM index files in javascript for node and the browser

    GMOD/bam-js’s past year of commit activity
    TypeScript 22 MIT 9 9 2 Updated Mar 31, 2025
  • cram-js Public

    Read CRAM v3 and v2 in node or in the browser

    GMOD/cram-js’s past year of commit activity
    TypeScript 18 MIT 9 8 1 Updated Mar 31, 2025
  • tabix-js Public

    Read Tabix-indexed files, either with .tbi or .csi indexes, in node or the browser

    GMOD/tabix-js’s past year of commit activity
    TypeScript 14 MIT 5 2 0 Updated Mar 31, 2025
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