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42 changes: 32 additions & 10 deletions src/convnets/unet.jl
Original file line number Diff line number Diff line change
Expand Up @@ -71,18 +71,34 @@ Backbone of any Metalhead ResNet-like model can be used as encoder
- `final`: final block as described in original paper
- `fdownscale`: downscale factor
"""
function unet(encoder_backbone, imgdims, outplanes::Integer,
final::Any = unet_final_block, fdownscale::Integer = 0)
backbonelayers = collect(flatten_chains(encoder_backbone))
layers = unetlayers(backbonelayers, imgdims; m_middle = unet_middle_block,
skip_upscale = fdownscale)
function unet(encoder_backbone, imgdims, inchannels::Integer, outplanes::Integer,
final::Any = unet_final_block, fdownscale::Integer = 0)
backbonelayers = collect(flatten_chains(encoder_backbone))
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please pay attention to the formatting, you lost the indentation here


outsz = Flux.outputsize(layers, imgdims)
layers = Chain(layers, final(outsz[end - 1], outplanes))
# Adjusting input size to include channels
adjusted_imgdims = (imgdims..., inchannels, 1)

return layers
end
layers = unetlayers(backbonelayers, adjusted_imgdims; m_middle = unet_middle_block,
skip_upscale = fdownscale)

outsz = Flux.outputsize(layers, adjusted_imgdims)
layers = Chain(layers, final(outsz[end - 1], outplanes))

return layers
end
function modify_first_conv_layer(encoder_backbone, inchannels)
for (index, layer) in enumerate(encoder_backbone.layers)
if isa(layer, Flux.Conv) # Checking for a convolutional layer
# Extracting the parameters
outchannels, kernel_size, stride, pad, activation = layer.out_channels, layer.kernel_size, layer.stride, layer.pad, layer.activation
# new convolutional layer created for desired input
new_conv_layer = Flux.Conv(kernel_size, inchannels => outchannels, stride=stride, pad=pad, activation=activation)
encoder_backbone.layers[index] = new_conv_layer
break
end
end
return encoder_backbone
end
"""
UNet(imsize::Dims{2} = (256, 256), inchannels::Integer = 3, outplanes::Integer = 3,
encoder_backbone = Metalhead.backbone(DenseNet(121)); pretrain::Bool = false)
Expand Down Expand Up @@ -114,12 +130,18 @@ end

function UNet(imsize::Dims{2} = (256, 256), inchannels::Integer = 3, outplanes::Integer = 3,
encoder_backbone = Metalhead.backbone(DenseNet(121)); pretrain::Bool = false)
layers = unet(encoder_backbone, (imsize..., inchannels, 1), outplanes)
# Modify the encoder backbone to adjust the first convolutional layer's input channels
encoder_backbone = modify_first_conv_layer(encoder_backbone, inchannels)

layers = unet(encoder_backbone, imsize, inchannels, outplanes)
model = UNet(layers)

if pretrain

artifact_name = "UNet"
loadpretrain!(model, artifact_name)
end

return model
end

Expand Down