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This PR fixes most of the warnings issued by the QA tools. Given I counted correctly, this brings down the total warnings from 1098 (528 Checkstyle, 555 PMD, 15 Spotbugs) to 218 (38 Checkstyle, 179 PMD, 1 Spotbugs), taking all source sets into account.
Most of the issues were due to bad code style and formatting, few of them were caused by actual logic. The remaining warnings either can't be fixed (at least I couldn't) or fixing requires an effort that is out of proportion. Some of this is due to a few QA rules that are contradictory or not applicable in the context of ExplorViz. I will open an issue with further details soon.