adds min_transcriptomic_reads as an optional argument#14
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manuelcarbajo wants to merge 1 commit intomainfrom
Open
adds min_transcriptomic_reads as an optional argument#14manuelcarbajo wants to merge 1 commit intomainfrom
manuelcarbajo wants to merge 1 commit intomainfrom
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To be able to run the ensembl-anno pipeline in microbes and avoid the "not enough transcriptomic reads" error which had a fixed value of 100,000 reads, this fix adds a flag to customise this threshold. It leaves the default 100,000 reads intact if no parameter is passed. It uses the flag --min_transcriptomic_reads to pass any other value.