2025-03-17 EFO 3.76.0

EFO 3.76.0 further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog. We have also impleneted temprary measures to fix some issues with the new measurement replacements. All terms should now sit below the parent class of 'measurement' (EFO:0001444).

Number of classes changed: 51
Number of classes added: 126
Number of classes deleted: 0

PLEASE NOTE: The Open Targets specific files do not have this fix due to issues with the generation pipeline. This will be hopefully fixed in an upcoming patch release.

2025-02-17 EFO 3.75.0

EFO 3.75.0 further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog. We have also updated the tools used in the EFO creation pipeline.

Number of classes changed: 5
Number of classes added: 0
Number of classes deleted: 0

2025-01-15 EFO 3.74.0

Experimental Factor Ontology version 3.74.0
Date Released: 15th January 2025
Class Count: 63,495

Summary:

EFO 3.74.0 includes a major change to the measurement branch with many EFO measurement terms being replaced by OBA terms. This release also further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 7603
Number of classes added: 5618
Number of classes deleted: 0

2024-12-16 EFO 3.73.0

Experimental Factor Ontology version 3.73.0
Date Released: 16th December 2024
Class Count: 57,878

Summary:

EFO 3.73.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 386
Number of classes added: 69
Number of classes deleted: 6

2024-11-18 release

Experimental Factor Ontology version 3.72.0
Date Released: 18th November 2024
Class Count: 57,815

Summary:

EFO 3.72.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog. A big clean up of definitions has also been carried out to remove duplicate definitions.

Number of classes changed: 24
Number of classes added: 8
Number of classes deleted: 0

2024-10-15 release

EFO - Release Notes

Experimental Factor Ontology version 3.71.0
Date Released: 15th October 2024
Class Count: 57,807

Summary:

EFO 3.71.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 2799
Number of classes added: 55
Number of classes deleted: 9

What's Changed

• Added sequencing term for #2265 by @zoependlington in #2297
• Added medical procedure term for #2125 by @zoependlington in #2298
• Fixed typo for #2229 by @zoependlington in #2299
• Added STRT-seq terms for #2251 by @zoependlington in #2300
• Added Finngen terms for #2284 by @zoependlington in #2301
• Fix empty hasDbXref by @Zethson in #2293
• Added sequencing terms for #2178 by @zoependlington in #2302
• EFO release 3.71.0 by @ar-ibrahim in #2303

New Contributors

• @Zethson made their first contribution in #2293

Full Changelog: v3.70.0...v3.71.0

2024-09-16 EFO 3.70.0

EFO 3.70.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 808
Number of classes added: 2337
Number of classes deleted: 1

There are also two new release versions of the Open Targets profile and slim as JSON files.

2024-08-15 EFO 3.69.0

EFO 3.69.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 33
Number of classes added: 106
Number of classes deleted: 0

2024-07-15 EFO 3.68.0

EFO 3.68.0 includes further alignments between EFO and MONDO as well as terms required for Open Targets projects, HCA, Array Express/Expression Atlas and the GWAS Catalog.

Number of classes changed: 404
Number of classes added: 3
Number of classes deleted: 2

2024-07-4 EFO 3.67.1 Patch Release

EFO 3.67.1 is a patch release to fix bugs with duplicated imports occurring in 3.67.0.

Number of classes changed: 275
Number of classes added: 4
Number of classes deleted: 0