Update README.md

Dreycey · May 25, 2023 · 9630952 · 9630952
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 PhageFilter uses a Sequence Bloom Tree (SBT) to filter bacteriophage reads from metagenomic files.
 
 ## Usage
+PhageFilter has three primary commands: (1) Build, (2) Query, and (3) Add. Each of these functions contains it's own set of required arguments that can be listed using the `--help` flag.
 
 ```
 Usage: phage_filter [OPTIONS] <COMMAND>