chore(deps): add sqlalchemy, psycopg, alembic

.github/workflows/ci.yml

@@ -69,6 +69,22 @@ jobs:
   python:
     name: Python Tests + Compile
     runs-on: ubuntu-latest
+    services:
+      postgres:
+        image: postgres:17-alpine
+        env:
+          POSTGRES_DB: clevis
+          POSTGRES_USER: clevis
+          POSTGRES_PASSWORD: clevis
+        ports:
+          - 5432:5432
+        options: >-
+          --health-cmd "pg_isready -U clevis"
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+    env:
+      DATABASE_URL: postgresql+psycopg://clevis:clevis@localhost:5432/clevis
     steps:
       - name: Checkout
         uses: actions/checkout@v4
@@ -85,6 +101,10 @@ jobs:
           python -m pip install -r apps/worker/requirements.txt
           python -m pip install -r requirements-test.txt
 
+      - name: Run migrations
+        working-directory: apps/api
+        run: python -m alembic upgrade head
+
       - name: Run Python tests
         run: python -m pytest -q
 

apps/api/alembic.ini

@@ -0,0 +1,141 @@
+# A generic, single database configuration.
+
+[alembic]
+# path to migration scripts.
+# this is typically a path given in POSIX (e.g. forward slashes)
+# format, relative to the token %(here)s which refers to the location of this
+# ini file
+script_location = %(here)s/alembic
+
+# template used to generate migration file names; The default value is %%(rev)s_%%(slug)s
+# Uncomment the line below if you want the files to be prepended with date and time
+# see https://alembic.sqlalchemy.org/en/latest/tutorial.html#editing-the-ini-file
+# for all available tokens
+# file_template = %%(year)d_%%(month).2d_%%(day).2d_%%(hour).2d%%(minute).2d-%%(rev)s_%%(slug)s
+
+# sys.path path, will be prepended to sys.path if present.
+# defaults to the current working directory.  for multiple paths, the path separator
+# is defined by "path_separator" below.
+prepend_sys_path = .
+
+
+# timezone to use when rendering the date within the migration file
+# as well as the filename.
+# If specified, requires the python>=3.9 or backports.zoneinfo library and tzdata library.
+# Any required deps can installed by adding `alembic[tz]` to the pip requirements
+# string value is passed to ZoneInfo()
+# leave blank for localtime
+# timezone =
+
+# max length of characters to apply to the "slug" field
+# truncate_slug_length = 40
+
+# set to 'true' to run the environment during
+# the 'revision' command, regardless of autogenerate
+# revision_environment = false
+
+# set to 'true' to allow .pyc and .pyo files without
+# a source .py file to be detected as revisions in the
+# versions/ directory
+# sourceless = false
+
+# version location specification; This defaults
+# to <script_location>/versions.  When using multiple version
+# directories, initial revisions must be specified with --version-path.
+# The path separator used here should be the separator specified by "path_separator"
+# below.
+# version_locations = %(here)s/bar:%(here)s/bat:%(here)s/alembic/versions
+
+# path_separator; This indicates what character is used to split lists of file
+# paths, including version_locations and prepend_sys_path within configparser
+# files such as alembic.ini.
+# The default rendered in new alembic.ini files is "os", which uses os.pathsep
+# to provide os-dependent path splitting.
+#
+# Note that in order to support legacy alembic.ini files, this default does NOT
+# take place if path_separator is not present in alembic.ini.  If this
+# option is omitted entirely, fallback logic is as follows:
+#
+# 1. Parsing of the version_locations option falls back to using the legacy
+#    "version_path_separator" key, which if absent then falls back to the legacy
+#    behavior of splitting on spaces and/or commas.
+# 2. Parsing of the prepend_sys_path option falls back to the legacy
+#    behavior of splitting on spaces, commas, or colons.
+#
+# Valid values for path_separator are:
+#
+# path_separator = :
+# path_separator = ;
+# path_separator = space
+# path_separator = newline
+#
+# Use os.pathsep. Default configuration used for new projects.
+path_separator = os
+
+# set to 'true' to search source files recursively
+# in each "version_locations" directory
+# new in Alembic version 1.10
+# recursive_version_locations = false
+
+# the output encoding used when revision files
+# are written from script.py.mako
+# output_encoding = utf-8
+
+# database URL.  This is consumed by the user-maintained env.py script only.
+# other means of configuring database URLs may be customized within the env.py
+# file.
+# URL is loaded from settings in env.py — do not set here
+
+
+[post_write_hooks]
+# post_write_hooks defines scripts or Python functions that are run
+# on newly generated revision scripts.  See the documentation for further
+# detail and examples
+
+# format using "black" - use the console_scripts runner, against the "black" entrypoint
+# hooks = black
+# black.type = console_scripts
+# black.entrypoint = black
+# black.options = -l 79 REVISION_SCRIPT_FILENAME
+
+# lint with attempts to fix using "ruff" - use the exec runner, execute a binary
+# hooks = ruff
+# ruff.type = exec
+# ruff.executable = %(here)s/.venv/bin/ruff
+# ruff.options = check --fix REVISION_SCRIPT_FILENAME
+
+# Logging configuration.  This is also consumed by the user-maintained
+# env.py script only.
+[loggers]
+keys = root,sqlalchemy,alembic
+
+[handlers]
+keys = console
+
+[formatters]
+keys = generic
+
+[logger_root]
+level = WARNING
+handlers = console
+qualname =
+
+[logger_sqlalchemy]
+level = WARNING
+handlers =
+qualname = sqlalchemy.engine
+
+[logger_alembic]
+level = INFO
+handlers =
+qualname = alembic
+
+[handler_console]
+class = StreamHandler
+args = (sys.stderr,)
+level = NOTSET
+formatter = generic
+
+[formatter_generic]
+format = %(levelname)-5.5s [%(name)s] %(message)s
+datefmt = %H:%M:%S

apps/api/alembic/README

@@ -0,0 +1 @@
+Generic single-database configuration.

apps/api/alembic/env.py

@@ -0,0 +1,45 @@
+from logging.config import fileConfig
+
+from alembic import context
+from sqlalchemy import engine_from_config, pool
+
+from src.core.config import settings
+from src.models.base import Base
+import src.models  # noqa: F401 — register all models for autogenerate
+
+config = context.config
+if config.config_file_name is not None:
+    fileConfig(config.config_file_name)
+
+target_metadata = Base.metadata
+
+
+def run_migrations_offline() -> None:
+    context.configure(
+        url=settings.database_url,
+        target_metadata=target_metadata,
+        literal_binds=True,
+        dialect_opts={"paramstyle": "named"},
+    )
+    with context.begin_transaction():
+        context.run_migrations()
+
+
+def run_migrations_online() -> None:
+    configuration = config.get_section(config.config_ini_section, {})
+    configuration["sqlalchemy.url"] = settings.database_url
+    connectable = engine_from_config(
+        configuration,
+        prefix="sqlalchemy.",
+        poolclass=pool.NullPool,
+    )
+    with connectable.connect() as connection:
+        context.configure(connection=connection, target_metadata=target_metadata)
+        with context.begin_transaction():
+            context.run_migrations()
+
+
+if context.is_offline_mode():
+    run_migrations_offline()
+else:
+    run_migrations_online()

apps/api/alembic/script.py.mako

@@ -0,0 +1,28 @@
+"""${message}
+
+Revision ID: ${up_revision}
+Revises: ${down_revision | comma,n}
+Create Date: ${create_date}
+
+"""
+from typing import Sequence, Union
+
+from alembic import op
+import sqlalchemy as sa
+${imports if imports else ""}
+
+# revision identifiers, used by Alembic.
+revision: str = ${repr(up_revision)}
+down_revision: Union[str, None] = ${repr(down_revision)}
+branch_labels: Union[str, Sequence[str], None] = ${repr(branch_labels)}
+depends_on: Union[str, Sequence[str], None] = ${repr(depends_on)}
+
+
+def upgrade() -> None:
+    """Upgrade schema."""
+    ${upgrades if upgrades else "pass"}
+
+
+def downgrade() -> None:
+    """Downgrade schema."""
+    ${downgrades if downgrades else "pass"}

apps/api/alembic/versions/0001_initial_schema.py

@@ -0,0 +1,52 @@
+"""initial schema
+
+Revision ID: 0001
+Revises:
+Create Date: 2026-05-12
+"""
+
+from alembic import op
+import sqlalchemy as sa
+
+revision = "0001"
+down_revision = None
+branch_labels = None
+depends_on = None
+
+
+def upgrade() -> None:
+    op.create_table(
+        "github_installations",
+        sa.Column("id", sa.Integer(), primary_key=True, autoincrement=True),
+        sa.Column("account_login", sa.String(), nullable=False),
+        sa.Column("account_type", sa.String(), nullable=False),
+        sa.Column("installation_id", sa.Integer(), nullable=True),
+        sa.Column("auth_mode", sa.String(), nullable=False),
+        sa.Column("token_ref", sa.String(), nullable=False),
+        sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.func.now()),
+    )
+    op.create_table(
+        "audit_logs",
+        sa.Column("id", sa.Integer(), primary_key=True, autoincrement=True),
+        sa.Column("actor", sa.String(), nullable=False),
+        sa.Column("action", sa.String(), nullable=False),
+        sa.Column("target", sa.String(), nullable=False),
+        sa.Column("payload", sa.Text(), nullable=False),
+        sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.func.now()),
+    )
+    op.create_table(
+        "jobs",
+        sa.Column("id", sa.Integer(), primary_key=True, autoincrement=True),
+        sa.Column("job_type", sa.String(), nullable=False),
+        sa.Column("payload", sa.Text(), nullable=False),
+        sa.Column("status", sa.String(), nullable=False, server_default="queued"),
+        sa.Column("result", sa.Text(), nullable=True),
+        sa.Column("created_at", sa.DateTime(timezone=True), server_default=sa.func.now()),
+        sa.Column("updated_at", sa.DateTime(timezone=True), server_default=sa.func.now()),
+    )
+
+
+def downgrade() -> None:
+    op.drop_table("jobs")
+    op.drop_table("audit_logs")
+    op.drop_table("github_installations")

apps/api/requirements.txt

@@ -3,3 +3,6 @@ uvicorn==0.35.0
 httpx==0.28.1
 pydantic==2.11.9
 pydantic-settings==2.14.1
+sqlalchemy==2.0.41
+psycopg[binary]==3.2.9
+alembic==1.16.1

apps/api/src/core/db.py

@@ -0,0 +1,17 @@
+from collections.abc import Generator
+
+from sqlalchemy import create_engine
+from sqlalchemy.orm import Session, sessionmaker
+
+from src.core.config import settings
+
+engine = create_engine(settings.database_url)
+SessionLocal = sessionmaker(bind=engine, autocommit=False, autoflush=False)
+
+
+def get_db() -> Generator[Session, None, None]:
+    db = SessionLocal()
+    try:
+        yield db
+    finally:
+        db.close()

apps/api/src/main.py

@@ -4,11 +4,9 @@
 from src.core.config import settings
 from src.core.logging import setup_logging
 from src.core.middleware import RequestIdMiddleware
-from src.core.storage import init_storage
 from src.routers import actions_cache, analytics, auth, health, jobs
 
 setup_logging()
-init_storage()
 
 app = FastAPI(title="clevis API", version="0.1.0")
 app.add_middleware(RequestIdMiddleware)