v5.0.3

What's Changed

• feat: rc5.0.3 by @karlnyr in #259
• Add raw read counts to alignment QC report by @karlnyr in #260

Full Changelog: v5.0.2...v5.0.3

v5.0.2

What's Changed

• Fix(logger bug) by @karlnyr in #258

Full Changelog: v5.0.1...v5.0.2

v5.0.1

What's Changed

• Bump soupsieve from 2.8.3 to 2.8.4 by @dependabot[bot] in #253
• Bump urllib3 from 2.6.3 to 2.7.0 by @dependabot[bot] in #251
• Bump black from 26.1.0 to 26.3.1 by @dependabot[bot] in #250
• Bump pytest from 9.0.2 to 9.0.3 by @dependabot[bot] in #249
• Bump mako from 1.3.11 to 1.3.12 by @dependabot[bot] in #248
• Bump requests from 2.32.5 to 2.33.0 by @dependabot[bot] in #247
• Bump pygments from 2.19.2 to 2.20.0 by @dependabot[bot] in #246
• Bump idna from 3.11 to 3.15 by @dependabot[bot] in #252
• Embed logos as base64 data URIs instead of remote URLs by @karlnyr in #255

New Contributors

• @dependabot[bot] made their first contribution in #253

Full Changelog: v5.0.0...v5.0.1

v5.0.0

What's Changed

• Reference db refactor v2 by @karlnyr in #229
• Swap to rending with jinja2 by @karlnyr in #227
• Fix Python version pinning: rename .python_version to .python-version by @Copilot in #236
• Migrate from setup.py/pip to pyproject.toml/uv for Python 3.12 by @karlnyr in #230
• Refactor code to python 3.12 by @karlnyr in #226
• Singularity-containers by @karlnyr in #228
• Feat/refactor config system by @karlnyr in #239
• Rename CLI entry point from microSALT to microsalt by @karlnyr in #238
• Remove conda prefix dependency and update job finish command to use microsalt binary by @karlnyr in #240
• Crud separation by @karlnyr in #242 and #243
• Stop updating references when using pipeline by @karlnyr in #244
• microSALT v.5.0.0 by @karlnyr in #225

New Contributors

• @Copilot made their first contribution in #236

Full Changelog: v4.2.8...v5.0.0

v4.2.8

What's Changed

• Remove swedac logo from alignment page, clarify scope of accreditation in #222

New Contributors

• @Karl-Svard made their first contribution in #224

Full Changelog: v4.2.7...v4.2.8

v4.2.7b

What's Changed

• hotfix(function split) by @karlnyr in #220
• Rc4.2.7b by @karlnyr in #221

Full Changelog: v4.2.7...v4.2.7b

v4.2.7

What's Changed

• add list of verified organism to typing report by @karlnyr in #217
• alter species parsing from url by @karlnyr in #218
• Rc4.2.7 by @karlnyr in #219

Full Changelog: v4.2.6...v4.2.7

v4.2.6

What's Changed

• support for new application tag by @karlnyr in #215
• Rc4.2.6 by @karlnyr in #216

Full Changelog: v4.2.5...v4.2.6

v4.2.5

What's Changed

• remove email option from mail job by @karlnyr in #214

Full Changelog: v4.2.4...v4.2.5

v4.2.4

Changed

• Double bumped the version in microSALT/init.py, due to it not being bumped in the previous version
• Fixed command string for the mail job, enabling logging and emails for the reports.