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COMBINE-lab / simpleaf Public

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Add Flex GEX support, release tooling, and docs updates#190

Merged

rob-p merged 21 commits intomainCOMBINE-lab/simpleaf:mainfrom

devCOMBINE-lab/simpleaf:devCopy head branch name to clipboard

Mar 19, 2026

Conversation Commits21 (21)Checks Files changed

Merged

Add Flex GEX support, release tooling, and docs updates#190
rob-p merged 21 commits intomainfrom
dev

Commits

Commits on Mar 17, 2026

Merge pull request #188 from COMBINE-lab/main
rob-p
authored
Add Organism, ProtocolType enums and Flex chemistry schema fields

rob-p
and
claude
committed
Add flex-quant subcommand for 10x Flex GEX pipeline

rob-p
and
claude
committed
Register 10x Flex GEX chemistries in chemistry registry

rob-p
and
claude
committed
Fix flex-quant: correct piscem subcommand and serde field mapping

rob-p
and
claude
committed

Commits on Mar 18, 2026

Skip seq_geom_parser validation for piscem-extended geometries

rob-p
and
claude
committed
Fix flex-quant: include all probes in t2g and use map-scrna subcommand

rob-p
and
claude
committed
Remove --struct-constraints from flex-quant

rob-p
and
claude
committed
Revert "Remove --struct-constraints from flex-quant"
rob-p
committed

Commits on Mar 19, 2026

make clippy happy
rob-p
committed
Merge pull request #189 from COMBINE-lab/multi-sample-rad
rob-p
authored
update docs
rob-p
committed
update .gitignore
rob-p
committed
update cargo files
rob-p
committed
update url
rob-p
committed
update url
rob-p
committed
update env
rob-p
committed
fix version
rob-p
committed
new cmdlib breaks stuff
rob-p
committed
lock necessary versions
rob-p
committed
fix paths again
rob-p
committed

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