CINECA WP3 Minimal Data Model

JSON Schema for minimal data model developed by WP3. This schema refer to the data model developed here.

Directory and file Structure

+-- schemas - contains source schema documents in yaml format 
+-- generated - generated files, should not edit  
|   +-- json - generated json files from yaml source
+-- yaml_to_json.py - python script to convert yaml to json
+-- README.md    

Description

• Cohort.yaml contains the schema for cohort level attributes
• Questionnaire.yaml contains the survey/questionnaire data for individuals
• AggregatedModel.yaml contains the aggregation of both cohort and questionnaire (which might not be very useful)
• CohortAttributes.yaml - basic cohort attributes
• Biosample.yaml - biosample (NCIT:C43412)
• LaboratoryMeasures.yaml - laboratory measures (Laboratory Procedure NCIT:C25294)
• SurveyAdministration.yaml - survey administration (NCIT:C64252)