R package for differential multi-omics analysis
Multi-Omics Suite provides a suite of functions to clean, filter, batch-correct, normalize, visualize, and perform differential expression analysis. While the package is designed for differential RNA-seq analysis and multi-omics datasets, it can be used for any data represented in a counts table. See the website for more information, documentation, and examples: https://ccbr.github.io/MOSuite/
You can install the development version of MOSuite from GitHub with:
# install.packages("remotes")
remotes::install_github("CCBR/MOSuite", dependencies = TRUE)Or install a specific version:
remotes::install_github("CCBR/MOSuite", dependencies = TRUE, ref = "v0.1.0")There is also a Docker container available at https://hub.docker.com/r/nciccbr/mosuite
singularity exec docker://nciccbr/mosuite:v0.2.0 R -s -e \
'cat("MOSuite version:", installed.packages()["MOSuite",][["Version"]])'Please see the introductory vignette for a quick start tutorial. Take a look at the reference documentation for detailed information on each function in the package.
Come across a bug? Open an issue and include a minimal reproducible example.
Have a question? Ask it in discussions.
Want to contribute to this project? Check out the contributing guidelines.
