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nextflow parameters to deal with latency and high I/O issues on GPFS

Status: Open.

#54 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Nov 11, 2025

set <code>-ansi-log false</code> when mode is slurm

Status: Open.

#53 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Sep 9, 2025

·  

2025-09

optional clean up step to delete workdir after successful pipeline completion

Status: Open.

#52 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Aug 22, 2025

run jobby if mode=slurm

enhancementNew feature or requestNew feature or request

Status: Open.

Feature

#45 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Mar 12, 2025

use nf-test &amp; coverage

enhancementNew feature or requestNew feature or request

high priority

Status: Open.

#35 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Oct 21, 2024

Refactor with new syntax for output definitions &amp; topic channels

Status: Open.

#28 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Jul 19, 2024

Glob argument for nextflow

bugSomething isn't workingSomething isn't working

Status: Open.

#20 In CCBR/CCBR_NextflowTemplate;

· dnousome opened on Dec 19, 2023

single-source pipeline description for CLI

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#19 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Nov 21, 2023

auto-generate contributors page

enhancementNew feature or requestNew feature or request

Status: Open.

#14 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Sep 19, 2023

github action to check docs site for link rot

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Aug 31, 2023

Consider using Quarto for documentation

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#3 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Aug 10, 2023

Edit docs examples with nextflow-specific config

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#2 In CCBR/CCBR_NextflowTemplate;

· kelly-sovacool opened on Aug 10, 2023