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fix(ci): restore green main (workflow callers, type errors, coverage, hardening) #24

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496524c
fix(ci): repair reusable-workflow callers, type errors, and coverage
williaby May 29, 2026
6c9b634
chore(security): harden workflows, pin actions, accurate README
claude May 15, 2026
bcdad33
fix(ci): drop setup-python pip cache from SonarCloud workflow
williaby May 26, 2026
63be743
fix(compliance): cover pre-existing files in REUSE.toml
williaby May 9, 2026
95585f5
fix(compliance): remove unused LICENSE files
williaby May 9, 2026
b76c478
fix(ci): set no-build:false for hatchling on org reusable workflows
williaby May 29, 2026
80dac4d
fix(deps): patch dependency CVEs, fix docs strict build and compat ma…
williaby May 29, 2026
a4ad68c
fix(docker): keep README.md in build context, silence DL3008
williaby May 29, 2026
1b22b47
fix(docker): place hadolint ignore directive immediately before RUN
williaby May 29, 2026
cd3be61
fix(docker)!: migrate to Chainguard Wolfi base for zero-CVE image
williaby May 29, 2026
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13 changes: 6 additions & 7 deletions .github/workflows/ci.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -31,27 +31,26 @@ jobs:
name: CI Pipeline
uses: ByronWilliamsCPA/.github/.github/workflows/python-ci.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-version: '3.12'
coverage-threshold: 80
source-directory: 'src'
test-directory: 'tests'
enable-sonarcloud: true
sonarcloud-organization: 'ByronWilliamsCPA'
sonarcloud-project-key: 'ByronWilliamsCPA_foundry_unify'
enable-codecov: true
run-integration-tests: true
run-security-tests: true
fail-on-llm-tags: false
secrets:
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

ci-gate:
name: CI Gate
runs-on: ubuntu-latest
needs: [ci]
if: always()
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Check CI results
run: |
if [ "${{ needs.ci.result }}" != "success" ]; then
Expand Down
5 changes: 5 additions & 0 deletions .github/workflows/codecov.yml
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Expand Up @@ -38,6 +38,11 @@ jobs:
runs-on: ubuntu-latest
if: ${{ github.event.workflow_run.conclusion == 'failure' }}
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Report status
run: |
echo "## Coverage Upload Skipped" >> $GITHUB_STEP_SUMMARY
Expand Down
7 changes: 6 additions & 1 deletion .github/workflows/dependency-review.yml
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Expand Up @@ -24,11 +24,16 @@ jobs:
name: Dependency Review
runs-on: ubuntu-latest
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
Comment on lines 32 to 33
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@coderabbitai coderabbitai Bot May 29, 2026

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🧹 Nitpick | 🔵 Trivial | ⚡ Quick win

Set persist-credentials: false on checkout.

This job only reads the dependency diff and never pushes, so the GITHUB_TOKEN does not need to persist in .git/config. Disabling persistence reduces the credential-exfiltration surface for the subsequently invoked third-party action.

🛡️ Proposed hardening 
       - name: Checkout repository
         uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
+        with:
+          persist-credentials: false

As per coding guidelines for .github/workflows/**: review for "Security best practices (minimal permissions, pinned actions)" and "Proper secret handling".

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
with:
persist-credentials: false
🧰 Tools
🪛 zizmor (1.25.2)

[warning] 32-33: credential persistence through GitHub Actions artifacts (artipacked): does not set persist-credentials: false

(artipacked)

🤖 Prompt for AI Agents 
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In @.github/workflows/dependency-review.yml around lines 32 - 33, Update the
checkout step that uses
"actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683" to explicitly set
persist-credentials: false so the GITHUB_TOKEN is not written into .git/config;
locate the checkout step (the line with uses: actions/checkout...) in the
workflow and add the persist-credentials: false key under that step to disable
credential persistence for this read-only job.


- name: Dependency Review
uses: actions/dependency-review-action@v4
uses: actions/dependency-review-action@3b139cfc5fae8b618d3eae3675e383bb1769c019 # v4.5.0
with:
fail-on-severity: high
# Deny copyleft and restrictive licenses (deny-list approach)
Expand Down
1 change: 1 addition & 0 deletions .github/workflows/docs.yml
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Expand Up @@ -31,6 +31,7 @@ jobs:
name: Build & Deploy Docs
uses: ByronWilliamsCPA/.github/.github/workflows/python-docs.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-version: '3.12'
deploy-to-pages: >-
${{
Expand Down
14 changes: 12 additions & 2 deletions .github/workflows/fips-compatibility.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -54,11 +54,16 @@ jobs:
runs-on: ubuntu-latest

steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
Comment on lines 62 to 63
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@coderabbitai coderabbitai Bot May 29, 2026

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🧹 Nitpick | 🔵 Trivial | ⚡ Quick win

Set persist-credentials: false on checkout (applies to both jobs).

Neither fips-check nor fips-runtime-test pushes to the repo, but both execute repository scripts and a github-script step after checkout. Persisting the GITHUB_TOKEN in .git/config is unnecessary and widens the exfiltration surface. The same applies to the checkout in fips-runtime-test at Line 213-214.

🛡️ Proposed hardening (apply to both checkout steps) 
       - name: Checkout repository
         uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
+        with:
+          persist-credentials: false

As per coding guidelines for .github/workflows/**: review for "Security best practices (minimal permissions, pinned actions)" and "Proper secret handling".

📝 Committable suggestion

‼️ IMPORTANT
Carefully review the code before committing. Ensure that it accurately replaces the highlighted code, contains no missing lines, and has no issues with indentation. Thoroughly test & benchmark the code to ensure it meets the requirements.

Suggested change
- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
with:
persist-credentials: false
🧰 Tools
🪛 zizmor (1.25.2)

[warning] 62-63: credential persistence through GitHub Actions artifacts (artipacked): does not set persist-credentials: false

(artipacked)

🤖 Prompt for AI Agents 
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In @.github/workflows/fips-compatibility.yml around lines 62 - 63, Update both
checkout steps that use the pinned actions/checkout invocation (the one shown
and the second at the checkout in the fips-runtime-test job) to disable
persisting the GITHUB_TOKEN by adding persist-credentials: false to the checkout
step inputs; specifically, in the fips-check and fips-runtime-test jobs modify
the checkout step that currently reads "uses:
actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683" to include the
persist-credentials: false key so the GITHUB_TOKEN is not written into
.git/config.


- name: Install uv
uses: astral-sh/setup-uv@v7
uses: astral-sh/setup-uv@2ddd2b9cb38ad8efd50337e8ab201519a34c9f24 # v7.1.1
with:
enable-cache: true

Expand Down Expand Up @@ -200,11 +205,16 @@ jobs:
needs: fips-check

steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

- name: Install uv
uses: astral-sh/setup-uv@v7
uses: astral-sh/setup-uv@2ddd2b9cb38ad8efd50337e8ab201519a34c9f24 # v7.1.1
with:
enable-cache: true

Expand Down
1 change: 1 addition & 0 deletions .github/workflows/mutation-testing.yml
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Expand Up @@ -42,6 +42,7 @@ jobs:
if: github.event_name != 'pull_request' || github.event.pull_request.head.repo.full_name == github.repository
uses: ByronWilliamsCPA/.github/.github/workflows/python-mutation.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-version: '3.12'
source-directory: 'src'
test-directory: 'tests'
Expand Down
7 changes: 6 additions & 1 deletion .github/workflows/pr-validation.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -60,7 +60,7 @@ jobs:
python-version: "3.12"

- name: Install UV
uses: astral-sh/setup-uv@v7
uses: astral-sh/setup-uv@2ddd2b9cb38ad8efd50337e8ab201519a34c9f24 # v7.1.1
with:
enable-cache: true
cache-dependency-glob: "uv.lock"
Expand Down Expand Up @@ -123,6 +123,11 @@ jobs:
needs: [core-validation, dead-code, link-check]
if: always()
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Check validation results
run: |
echo "## Dependency & Standards Validation" >> $GITHUB_STEP_SUMMARY
Expand Down
6 changes: 5 additions & 1 deletion .github/workflows/python-compatibility.yml
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Expand Up @@ -37,12 +37,16 @@ jobs:
name: Python Compatibility Matrix
uses: ByronWilliamsCPA/.github/.github/workflows/python-compatibility.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-versions: '["3.10", "3.11", "3.12", "3.13"]'
operating-systems: '["ubuntu-latest"]'
include-macos: true
include-windows: true
source-directory: 'src'
test-command: 'pytest tests/ -v --tb=short -x --ignore=tests/integration --ignore=tests/load -m "not slow and not integration"'
# No -m marker expression: the embedded quotes do not survive the org
# workflow's shell expansion (pytest then reads "slow" as a path). The
# integration/load suites are excluded by path instead.
test-command: 'pytest tests/ -v --tb=short -x --ignore=tests/integration --ignore=tests/load'
Comment on lines +46 to +49
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@coderabbitai coderabbitai Bot May 29, 2026

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⚠️ Potential issue | 🟡 Minor | ⚡ Quick win

🧩 Analysis chain

🏁 Script executed:

#!/bin/bash
# Find tests marked slow that are outside tests/integration and tests/load.
rg -nP '`@pytest`\.mark\.slow' -g 'tests/**/*.py' \
  -g '!tests/integration/**' -g '!tests/load/**'

Repository: ByronWilliamsCPA/Unify

Length of output: 48

🏁 Script executed:

#!/bin/bash
set -euo pipefail

# 1) Show the workflow around the cited lines and also any prior `-m` usage in the file
echo "---- workflow snippet (.github/workflows/python-compatibility.yml) ----"
nl -ba .github/workflows/python-compatibility.yml | sed -n '1,120p'

# 2) Search for any `-m` expressions mentioning slow/integration in this workflow
echo "---- -m expressions in workflow ----"
rg -n "pytest.*-m|--ignore=tests/integration|--ignore=tests/load|slow|integration" .github/workflows/python-compatibility.yml

# 3) Find slow-marked tests anywhere
echo "---- `@pytest.mark.slow` anywhere under tests ----"
rg -nP '`@pytest`\.mark\.slow' tests/**/*.py || true

# 4) Re-run the original "outside integration/load" query (the earlier run returned exit 1)
echo "---- `@pytest.mark.slow` outside tests/integration and tests/load ----"
rg -nP '`@pytest`\.mark\.slow' -g 'tests/**/*.py' \
  -g '!tests/integration/**' -g '!tests/load/**' || true

Repository: ByronWilliamsCPA/Unify

Length of output: 199

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- workflow file head (with line numbers) ----"
cat -n .github/workflows/python-compatibility.yml | sed -n '1,120p'

echo "---- -m / slow / ignore usage in workflow ----"
rg -n "pytest.*-m|--ignore=tests/integration|--ignore=tests/load|slow|integration" .github/workflows/python-compatibility.yml || true

echo "---- `@pytest.mark.slow` anywhere under tests ----"
rg -nP '`@pytest`\.mark\.slow' tests/**/*.py || true

echo "---- `@pytest.mark.slow` outside integration/load dirs ----"
rg -nP '`@pytest`\.mark\.slow' -g 'tests/**/*.py' \
  -g '!tests/integration/**' -g '!tests/load/**' || true

Repository: ByronWilliamsCPA/Unify

Length of output: 2545

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- any pytest -m usage mentioning slow/integration in workflows ----"
rg -n "pytest .* -m|pytest.*--ignore=tests/integration|--ignore=tests/load|not slow|slow and not|integration and not" .github/workflows || true

echo "---- references to 'slow' in tests (broader than mark.slow) ----"
rg -n "slow" tests || true

echo "---- pytest marker declarations for slow (pytest.ini/pyproject/etc.) ----"
rg -n "markers:|@?pytest\.mark|slow" pyproject.toml tests . || true

Repository: ByronWilliamsCPA/Unify

Length of output: 26934

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- any pytest.mark.slow / mark.slow usage ----"
rg -nP 'pytest\.mark\.slow|mark\.slow' tests/**/*.py || true

echo "---- any -m selections referencing slow in workflows ----"
rg -n "pytest .* -m|pytest.*--ignore|not slow|not slow and|slow and" .github/workflows || true

echo "---- any 'slow' marker selection in repo docs/config (for context) ----"
rg -n "not slow|mark.slow|`@pytest`\.mark\.slow" pyproject.toml tests .github/workflows || true

Repository: ByronWilliamsCPA/Unify

Length of output: 563

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- `@pytest.mark.integration` anywhere ----"
rg -nP '`@pytest`\.mark\.integration|pytestmark\s*=\s*pytest\.mark\.integration' tests/**/*.py || true

echo "---- `@pytest.mark.integration` outside tests/integration dir ----"
rg -nP '`@pytest`\.mark\.integration|pytestmark\s*=\s*pytest\.mark\.integration' \
  -g 'tests/**/*.py' \
  -g '!tests/integration/**' \
  || true

Repository: ByronWilliamsCPA/Unify

Length of output: 386

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- tests/conftest.py (relevant range) ----"
cat -n tests/conftest.py | sed -n '1,140p'

echo "---- any code that programmatically applies the 'slow' mark ----"
rg -n "add_marker\\(['\"]slow['\"]\\)|mark\\.slow|pytest\\.mark\\.slow|\\bslow\\b.*mark|mark.*\\bslow\\b" tests/**/*.py tests/conftest.py pyproject.toml || true

Repository: ByronWilliamsCPA/Unify

Length of output: 5226

🏁 Script executed:

#!/bin/bash
set -euo pipefail

echo "---- all occurrences of 'slow' in tests/conftest.py ----"
rg -n "slow" tests/conftest.py || true

echo "---- pytest collection hooks in tests/conftest.py ----"
rg -n "pytest_collection_|add_marker|collect|modifyitems" tests/conftest.py || true

Repository: ByronWilliamsCPA/Unify

Length of output: 296

🏁 Script executed:

#!/bin/bash
set -euo pipefail

cat -n tests/test_example.py | sed -n '150,240p'

Repository: ByronWilliamsCPA/Unify

Length of output: 2455

Fix test selection semantics: --ignore doesn’t replace marker deselection for integration

      # No -m marker expression: the embedded quotes do not survive the org
      # workflow's shell expansion (pytest then reads "slow" as a path). The
      # integration/load suites are excluded by path instead.
      test-command: 'pytest tests/ -v --tb=short -x --ignore=tests/integration --ignore=tests/load'

The workflow no longer uses -m marker filtering, but the repo contains no @pytest.mark.slow tests, so dropping the slow deselection isn’t a concern here. The real change is that integration-marked tests outside tests/integration will now run (e.g., tests/test_example.py), so align the desired selection by either moving those tests under tests/integration or excluding them by path as well.

🤖 Prompt for AI Agents 
Verify each finding against current code. Fix only still-valid issues, skip the
rest with a brief reason, keep changes minimal, and validate.

In @.github/workflows/python-compatibility.yml around lines 46 - 49, The
workflow currently runs pytest via the test-command string and only excludes
files by path (--ignore=tests/integration --ignore=tests/load), which lets tests
marked `@pytest.mark.integration` outside tests/integration still run; either move
all integration-marked tests into tests/integration (so the existing --ignore
covers them) or update the test-command to explicitly deselect the marker (e.g.,
invoke pytest with -m "not integration and not load") while ensuring the YAML
quoting preserves the -m argument (adjust the YAML string quoting or use a
multiline/pipe scalar so the embedded quotes survive); locate the test-command
string in the workflow and apply one of these two fixes.

coverage-report: false
fail-fast: false
timeout-minutes: 30
Expand Down
1 change: 1 addition & 0 deletions .github/workflows/release.yml
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Expand Up @@ -46,6 +46,7 @@ jobs:
name: Release Pipeline
uses: ByronWilliamsCPA/.github/.github/workflows/python-release.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-version: '3.12'
coverage-threshold: 80
source-directory: 'src'
Expand Down
10 changes: 10 additions & 0 deletions .github/workflows/reuse.yml
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Expand Up @@ -25,6 +25,11 @@ jobs:
name: Check REUSE Compliance
runs-on: ubuntu-latest
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

Expand All @@ -48,6 +53,11 @@ jobs:
name: Validate License Files
runs-on: ubuntu-latest
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2

Expand Down
1 change: 1 addition & 0 deletions .github/workflows/sbom.yml
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Expand Up @@ -39,6 +39,7 @@ jobs:
name: SBOM & Security
uses: ByronWilliamsCPA/.github/.github/workflows/python-sbom.yml@main
with:
no-build: false # hatchling build backend: editable install must build
python-version: '3.12'
fail-on-vulnerabilities: true
severity-threshold: 'CRITICAL,HIGH'
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/security-analysis.yml
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Expand Up @@ -34,14 +34,14 @@ jobs:
name: Security Scan
uses: ByronWilliamsCPA/.github/.github/workflows/python-security-analysis.yml@main
with:
no-build: false # hatchling build backend: editable install must build
source-directory: 'src'
python-version: '3.12'
fail-on-high: true
fail-on-medium: false
run-codeql: true
run-dependency-review: true
run-bandit: true
run-safety: true
run-osv: true

security-gate-success:
Expand Down
2 changes: 1 addition & 1 deletion .github/workflows/slsa-provenance.yml
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Expand Up @@ -56,7 +56,7 @@ jobs:
python-version: "3.12"

- name: Install UV
uses: astral-sh/setup-uv@v7
uses: astral-sh/setup-uv@2ddd2b9cb38ad8efd50337e8ab201519a34c9f24 # v7.1.1
with:
enable-cache: true

Expand Down
13 changes: 11 additions & 2 deletions .github/workflows/sonarcloud.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -40,6 +40,11 @@ jobs:
outputs:
has-token: ${{ steps.check.outputs.has-token }}
steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Check for SONAR_TOKEN
id: check
run: |
Expand All @@ -63,6 +68,11 @@ jobs:
timeout-minutes: 15

steps:
- name: Harden the runner
uses: step-security/harden-runner@91182cccc01eb5e619899d80e4e971d6181294a7 # v2.10.1
with:
egress-policy: audit

- name: Checkout repository
uses: actions/checkout@11bd71901bbe5b1630ceea73d27597364c9af683 # v4.2.2
with:
Expand All @@ -83,7 +93,6 @@ jobs:
uses: actions/setup-python@0b93645e9fea7318ecaed2b359559ac225c90a2b # v5.3.0
with:
python-version: '3.12'
cache: 'pip'

- name: Install UV
if: steps.check-code.outputs.has-code == 'true'
Expand Down Expand Up @@ -133,7 +142,7 @@ jobs:
-Dsonar.python.version=3.12

- name: Check Quality Gate
uses: sonarsource/sonarqube-quality-gate-action@master
uses: sonarsource/sonarqube-quality-gate-action@cf038b0e0cdecfa9e56c198bbb7d21d751d62c3b # v1.2.0
timeout-minutes: 5
env:
SONAR_TOKEN: ${{ secrets.SONAR_TOKEN }}
Expand Down
73 changes: 0 additions & 73 deletions LICENSES/Apache-2.0.txt
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