Docs: Fix commands given in the examples #43
adrien-berchetAnnotations
2 errors and 1 warning
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test_vacuum_workflow.test_ValidateVacuumSynthesis@group_vacuum:
tests/test_vacuum_workflow.py#L30
AssertionError: The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/morphometrics/morphometrics_apical_dendrite.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/morphometrics/morphometrics_apical_dendrite.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/morphometrics/morphometrics_basal_dendrite.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/morphometrics/morphometrics_basal_dendrite.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_vacuum/out/validation/score_matrix_reports.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw0/test_ValidateVacuumSynthesis0/out/validation/score_matrix_reports.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
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test_O1_workflow.test_ValidateSynthesis@group_O1:
tests/test_O1_workflow.py#L25
AssertionError: The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_small_O1/out/validation/path_distance_fit.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/out/validation/path_distance_fit.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_small_O1/out/validation/scales/statistics.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/out/validation/scales/statistics.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
The files '/home/runner/work/synthesis-workflow/synthesis-workflow/tests/data/in_small_O1/out/validation/score_matrix_reports.pdf' and '/home/runner/work/synthesis-workflow/synthesis-workflow/.tox/py310/tmp/popen-gw1/test_ValidateSynthesis0/out/validation/score_matrix_reports.pdf' are different:
Exception raised: (Exception) Cannot find ImageMagick's compare program. Is ImageMagick installed? If so, you can try setting environment variable COMPARE to the complete path of the compare executable. Environment variable COMPARE is currently: unset .
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Check PR title
ubuntu-latest pipelines will use ubuntu-24.04 soon. For more details, see https://github.com/actions/runner-images/issues/10636
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