update napari plugin doc

docs/napari_plugin.md

@@ -1,5 +1,7 @@
 # Napari Plugin
 
+## Starting the plugin
+
 The napari plugin has been redesigned in the newer version.
 To activate the plugin, activate the `napari-lattice` environment in your terminal and type `napari` in the console.
 The plugin is under `Lattice Lightsheet Analysis`
@@ -22,14 +24,38 @@ To load an image, drag and drop it into napari. You can get some sample data [he
 
 ![open_image](./images/003_open_image.png){ width="600" }
 
+## Configuration
+
+To configure any parameters, you can change the settings here:
+
+![settings](./images/004_configure.png)
+
+## Deskewing
+
 To use the specific image for processing, you will have to select it under the `Image Layer(s) to Deskew` box on the right. Here, we will click on `RBC_tiny`. As its a czi file it should read the `metadata` accordingly and you will see a green tick.
 
 ![deskew_active](./images/deskew_active.png)
 
-To configure any parameters, you can change the settings here:
+If you are loading a czi, the metadata fields should be populated automatically.
 
-![settings](./images/004_configure.png)
+To `Preview` the deskewed image, click `Preview` and choose the appropriate `channel` and `time`.
+
+You should see the deskewed image appear as an extra layer with the `Preview` suffix attached to it.
+
+![deskewed](./images/005_deskewed.png){ width="600" }
+
+??? Extra_info
+    If you look at the terminal after deskew, you should see the settings used and any other metadata associated with the dataset. It is handy for troubleshooting.
 
 More instructions to be added...
 
+## Deconvolution
+
+## Cropping
+
+## Workflow
+
+## Output (Saving files)
+
+