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2 changes: 2 additions & 0 deletions NEWS
Original file line number Diff line number Diff line change
Expand Up @@ -18,6 +18,8 @@ BUG FIXES AND MINOR IMPROVEMENTS
checks
o Chunks in Rnw vignettes with no labels are now correctly identified
o `sessionInfo` checks in vignettes occur only when code chunks are present
o BiocCheck() options are now ordered alphabetically in documentation to
make it easier to find specific options (@Bisaloo, #229).

CHANGES IN VERSION 1.44.0
-----------------------
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46 changes: 23 additions & 23 deletions R/BiocCheck.R
Original file line number Diff line number Diff line change
Expand Up @@ -22,39 +22,39 @@
#'
#' @section dot-options:
#'
#' * `build-output-file`: file containing R CMD build output, for
#' additional analysis
#' * `new-package`: enable checks specific to new packages
#' * `no-check-dependencies`: disable check for bad dependencies
#' * `no-check-deprecated`: disable check for usage of deprecated packages
#' * `no-check-remotes`: disable check for usage of remote packages other
#' than those hosted on CRAN or Bioconductor
#' * `no-check-version-num`: disable check for valid version number
#' * `no-check-R-ver`: disable check for valid R version
#' * `no-check-pkg-size`: disable check for package tarball size
#' * `no-check-file-size`: disable check for individual file size
#' * `no-check-bioc-views`: disable biocViews-specific checks (for non-BioC
#' packages)
#' * `no-check-bbs`: disable BBS-specific checks (for non-BioC packages).
#' Valid DESCRIPTION
#' * `no-check-description`: disable DESCRIPTION file checks
#' * `no-check-vignettes`: disable vignette checks
#' * `no-check-library-calls`: disable check usage of functions that
#' install or update packages
#' * `no-check-install-self`: disable check for require or library of
#' itself
#' * `no-check-bioc-help`: disable check for registration on Bioconductor
#' * `no-check-bioc-views`: disable biocViews-specific checks (for non-BioC
#' packages)
#' mailing list and support site
#' * `no-check-coding-practices`: disable check for some common best coding
#' practices
#' * `no-check-CRAN`: disable check for if package exists in CRAN
#' * `no-check-dependencies`: disable check for bad dependencies
#' * `no-check-deprecated`: disable check for usage of deprecated packages
#' * `no-check-description`: disable DESCRIPTION file checks
#' * `no-check-file-size`: disable check for individual file size
#' * `no-check-formatting`: disable checks for file formatting
#' * `no-check-function-len`: disable check for function length
#' * `no-check-install-self`: disable check for require or library of
#' itself
#' * `no-check-library-calls`: disable check usage of functions that
#' install or update packages
#' * `no-check-man-doc`: disable checks for man page documentation
#' * `no-check-news`: disable checks for NEWS file
#' * `no-check-unit-tests`: disable checks for unit tests
#' * `no-check-pkg-size`: disable check for package tarball size
#' * `no-check-R-ver`: disable check for valid R version
#' * `no-check-remotes`: disable check for usage of remote packages other
#' than those hosted on CRAN or Bioconductor
#' * `no-check-skip-bioc-tests`: disable check for tests that skip when on
#' bioc
#' * `no-check-formatting`: disable checks for file formatting
#' * `no-check-CRAN`: disable check for if package exists in CRAN
#' * `no-check-bioc-help`: disable check for registration on Bioconductor
#' mailing list and support site
#' * `build-output-file`: file containing R CMD build output, for
#' additional analysis
#' * `no-check-unit-tests`: disable checks for unit tests
#' * `no-check-version-num`: disable check for valid version number
#' * `no-check-vignettes`: disable vignette checks
#' * `quit-with-status`: enable exit code option when performing check
#'
#' @param package The path to an R package directory or tarball (`.tar.gz`).
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46 changes: 23 additions & 23 deletions man/BiocCheck.Rd

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