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Rebuild containers for c.utf-8 support - batch 5 rebased #3599

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Merged
wm75 merged 12 commits into from
Jul 14, 2025
Merged

Rebuild containers for c.utf-8 support - batch 5 rebased #3599

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9716f47
Rebuild containers for c.utf-8 support - batch 5 rebased
wm75 Jul 9, 2025
400e27e
Fix attempt 1
wm75 Jul 9, 2025
4ac83d6
Fix attempt 2
wm75 Jul 11, 2025
24cc259
Merge branch 'master' into batched-container-updates-5-rebased
wm75 Jul 14, 2025
9f39129
Fix attempt 3
wm75 Jul 14, 2025
930eb75
Fix attempt 4
wm75 Jul 14, 2025
20a2607
Fix attempt 5
wm75 Jul 14, 2025
7ab5572
Fix attempt 5
wm75 Jul 14, 2025
c0acaa6
Merge branch 'master' into batched-container-updates-5-rebased
wm75 Jul 14, 2025
b1f17d0
Fix attempt 6
wm75 Jul 14, 2025
2261f6e
Fix attempt 7
wm75 Jul 14, 2025
ebefea5
Merge branch 'master' into batched-container-updates-5-rebased
wm75 Jul 14, 2025
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11 changes: 11 additions & 0 deletions combinations/hash.tsv
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Expand Up @@ -885,3 +885,14 @@ samtools=1.10,bcftools=1.10,gawk=5.0.1,htslib=1.10 quay.io/bioconda/base-glibc-b
lastz=1.0.4,bzip2=1.0.6 quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-rmysql=0.10.11,bioconductor-diffbind=2.6.5,r-getopt=1.20.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bamtools=2.4.0,samtools=1.3.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bcftools=1.9,samtools=1.9,htslib=1.9,gawk=5.0.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
openbabel=2.4.1,python=3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
pandas=0.24.2,scipy=1.2.1,numpy=1.16.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-rjson=0.2.15,bioconductor-diffbind=2.6.6,r-getopt=1.20.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bedtools=2.27.1,samtools=1.9 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bowtie2=2.2.8,tophat=2.1.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
samtools=1.11,subread=2.0.1,coreutils=8.31 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bioconductor-deseq2=1.14.1,r-getopt=1.20.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-batch=1.1_5,unzip=6.0,bioconductor-xcms=3.12.0,r-rcolorbrewer=1.1_2 quay.io/bioconda/base-glibc-busybox-bash:latest 1
samtools=1.6,stringtie=1.3.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
lofreq=2.1.3.1,samtools=1.9 quay.io/bioconda/base-glibc-busybox-bash:latest 1