Skip to content

Rebuild containers for c.utf-8 support - batch 1 #3588

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
wm75 merged 13 commits into from
Jul 13, 2025
Merged

Rebuild containers for c.utf-8 support - batch 1 #3588

Changes from all commits
Commits
Show all changes
13 commits
Select commit Hold shift + click to select a range
d8421d1
Rebase onto master
wm75 Jul 8, 2025
99bbc40
Rebase onto master
wm75 Jul 8, 2025
2c2067b
Fix attempt 5
wm75 Jul 8, 2025
1068cdb
Fix attempt 6
wm75 Jul 8, 2025
661f813
Fix attempt 7
wm75 Jul 8, 2025
b81afd1
Fix attempt 8
wm75 Jul 9, 2025
5d1fcc4
Fix attempt 9
wm75 Jul 9, 2025
8ce2702
Fix attempt 10
wm75 Jul 12, 2025
08ec6a4
Merge branch 'master' into batched-container-updates-1
wm75 Jul 12, 2025
b38105b
Fix attempt 11
wm75 Jul 12, 2025
355e9bd
Fix attempt 12
wm75 Jul 12, 2025
214c621
Add some successfully building containers back in
wm75 Jul 12, 2025
62016a3
Merge branch 'master' into batched-container-updates-1
wm75 Jul 12, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
13 changes: 13 additions & 0 deletions combinations/hash.tsv
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -843,3 +843,16 @@ pysam=0.15,matplotlib=3.1.2 quay.io/bioconda/base-glibc-busybox-bash:latest 1
samtools=1.9,star=2.7.2b quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-seurat=3.1.2,r-rmarkdown=2.0,pandoc=2.7.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-ggplot2=2.2.1,r-svglite=1.2.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
htseq=0.6.1.post1,samtools=1.3.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
samtools=1.9,coreutils=8.30,subread=1.6.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bioconductor-org.mm.eg.db=3.8.2,r-optparse=1.6.2,bioconductor-org.dm.eg.db=3.8.2,r-dplyr=0.8.3,bioconductor-goseq=1.36.0,bioconductor-org.dr.eg.db=3.8.2,r-ggplot2=3.2.1,bioconductor-org.hs.eg.db=3.8.2 quay.io/bioconda/base-glibc-busybox-bash:latest 1
tar=1.32,busco=4.1.4 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bamtools=2.4.0,samtools=1.4.1 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bioconductor-dexseq=1.20.1,r-getopt=1.20.0,r-rjson=0.2.15 quay.io/bioconda/base-glibc-busybox-bash:latest 1
cdsapi=0.5.1,unzip=6.0,cdo=1.9.9,tar=1.34,python=3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
bioconductor-bionet=1.34.0,r-getopt=1.20.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1
macs2=2.1.1.20160309,gawk=4.1.3 quay.io/bioconda/base-glibc-busybox-bash:latest 1
samtools=1.2,bedtools=2.26.0gx quay.io/bioconda/base-glibc-busybox-bash:latest 1
r-rjson=0.2.20,r-getopt=1.20.3,r-base=3.5.1,bioconductor-diffbind=2.10.0 quay.io/bioconda/base-glibc-busybox-bash:latest 1
ucsc-genepredtobed=357,ucsc-gtftogenepred=357 quay.io/bioconda/base-glibc-busybox-bash:latest 1
kalign3=3.2.2,kcalign=0.5.13 quay.io/bioconda/base-glibc-busybox-bash:latest 1