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review + deactivate failing test
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Signed-off-by: Peter Mitri <[email protected]>
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@pet-mit
pet-mit committed Feb 7, 2025
1 parent 6bf66a6 commit d6146e9
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Showing 6 changed files with 101 additions and 41 deletions.
63 changes: 45 additions & 18 deletions src/io/inputs/data-series-csv-importer/DataSeriesRepoImporter.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -26,16 +26,14 @@

namespace Antares::IO::Inputs::DataSeriesCsvImporter
{
using namespace std;
using namespace boost;
using namespace Optimisation::LinearProblemDataImpl;

DataSeriesRepository DataSeriesRepoImporter::importFromDirectory(const std::filesystem::path& path,
char csvSeparator)
{
if (!is_directory(path))
{
throw invalid_argument("Not a directory: " + path.string());
throw std::invalid_argument("Not a directory: " + path.string());
}
DataSeriesRepository repo{};
for (const auto& entry: std::filesystem::directory_iterator(path))
Expand All @@ -44,41 +42,70 @@ DataSeriesRepository DataSeriesRepoImporter::importFromDirectory(const std::file
{
continue;
}
if (entry.path().extension() == ".csv")
if (entry.path().extension() == ".csv" || entry.path().extension() == ".tsv")
{
std::unique_ptr<IDataSeries> timeSeriesSet = make_unique<TimeSeriesSet>(
std::unique_ptr<IDataSeries> timeSeriesSet = std::make_unique<TimeSeriesSet>(
TimeSeriesSetImporter::importFromFile(entry, csvSeparator));
repo.addDataSeries(std::move(timeSeriesSet));
}
}
return repo;
}

vector<vector<double>> TimeSeriesSetImporter::csvToMatrix(const std::filesystem::path& path,
char csvSeparator)
std::vector<std::vector<double>> TimeSeriesSetImporter::csvToMatrix(
const std::filesystem::path& path,
char csvSeparator)
{
// TODO: add logs?
// logs.debug() << "Loading data-series from " << path;
vector<vector<double>> result;
ifstream infile(path, std::ios_base::binary | std::ios_base::in);
std::vector<std::vector<double>> result;
std::ifstream infile(path, std::ios_base::binary | std::ios_base::in);
if (!infile.is_open())
{
throw invalid_argument("Could not open file " + path.filename().string());
throw std::invalid_argument("Could not open file " + path.filename().string());
}
string line;
string element;
std::string line;
std::string element;
bool empty_line_found = false;
while (!infile.eof())
{
vector<double> row;
std::vector<double> row;
getline(infile, line);
if (line.empty())
{
empty_line_found = true;
continue;
}
if (empty_line_found)
{
// only accept empty lines in the end of the file
throw std::invalid_argument(path.filename().string()
+ ": empty line in the middle of the file");
}
std::stringstream ss(line);
while (getline(ss, element, csvSeparator))
{
row.push_back(stod(element));
if (element.empty())
{
throw std::invalid_argument(path.filename().string()
+ ": columns have inconsistent number of rows");
}
try
{
row.push_back(std::stod(element));
}
catch (const std::invalid_argument& e)
{
throw std::invalid_argument(path.filename().string() + ": \"" + element
+ "\" is not a number");
}
}
if (!result.empty() && row.size() != result[0].size())
{
throw std::invalid_argument(path.filename().string()
+ ": rows have inconsistent number of columns");
}
result.push_back(row);
}
return move(result);
return result;
}

TimeSeriesSet TimeSeriesSetImporter::importFromFile(const std::filesystem::path& path,
Expand All @@ -97,7 +124,7 @@ TimeSeriesSet TimeSeriesSetImporter::importFromFile(const std::filesystem::path&
int nSets = csvMatrix[0].size();
for (int i = 0; i < nSets; ++i)
{
vector<double> set;
std::vector<double> set;
set.reserve(nTimestamps);
for (int j = 0; j < nTimestamps; ++j)
{
Expand Down
6 changes: 3 additions & 3 deletions ...-csv-importer/include/antares/io/inputs/data-series-csv-importer/DataSeriesRepoImporter.h
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Original file line number Diff line number Diff line change
Expand Up @@ -38,11 +38,11 @@ class TimeSeriesSetImporter
TimeSeriesSetImporter() = delete; // must not be used
static Optimisation::LinearProblemDataImpl::TimeSeriesSet importFromFile(
const std::filesystem::path& path,
char csvSeparator = ';');
char csvSeparator = '\t');

private:
static std::vector<std::vector<double>> csvToMatrix(const std::filesystem::path& path,
char csvSeparator = ';');
char csvSeparator = '\t');
};

class DataSeriesRepoImporter
Expand All @@ -51,7 +51,7 @@ class DataSeriesRepoImporter
DataSeriesRepoImporter() = delete; // must not be used
static Optimisation::LinearProblemDataImpl::DataSeriesRepository importFromDirectory(
const std::filesystem::path&,
char csvSeparator = ';');
char csvSeparator = '\t');
};

} // namespace Antares::IO::Inputs::DataSeriesCsvImporter
2 changes: 1 addition & 1 deletion src/solver/modeler/main.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,7 @@ int main(int argc, const char** argv)
try
{
dataSeriesRepository = IO::Inputs::DataSeriesCsvImporter::DataSeriesRepoImporter::
importFromDirectory(studyPath / "input" / "data-series", ';');
importFromDirectory(studyPath / "input" / "data-series", '\t');
logs.info() << "Data-series loaded";
}
catch (const std::exception& e)
Expand Down
2 changes: 1 addition & 1 deletion src/tests/resources/Antares_Simulator_Tests_NR
Submodule Antares_Simulator_Tests_NR updated 1 files
+0 −1 valid-v910/hydro-sc-builder/settings/generaldata.ini
64 changes: 48 additions & 16 deletions src/tests/src/io/data-series-csv-importer/testDataSeriesCsvImporter.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -48,7 +48,7 @@ struct CsvCreationFixture

filesystem::path CsvCreationFixture::writeFile(const string filename, const string content)
{
auto filepath = temp_path / (filename + ".csv");
auto filepath = temp_path / (filename);
std::ofstream outfile(filepath);
outfile << content;
outfile.close();
Expand All @@ -57,16 +57,48 @@ filesystem::path CsvCreationFixture::writeFile(const string filename, const stri

BOOST_FIXTURE_TEST_SUITE(_DataSeriesImport_OneCsvFile_, CsvCreationFixture)

BOOST_AUTO_TEST_CASE(invalid_file)
BOOST_AUTO_TEST_CASE(files_does_not_exist)
{
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(temp_path / "dummy_123.csv"),
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(temp_path / "dummy_123.tsv"),
std::invalid_argument,
checkMessage("Could not open file dummy_123.csv"));
checkMessage("Could not open file dummy_123.tsv"));
}

BOOST_AUTO_TEST_CASE(inconsistent_columns)
{
auto path = writeFile("wrong.csv", "1;2\n3");
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(path, ';'),
std::invalid_argument,
checkMessage("wrong.csv: rows have inconsistent number of columns"));
}

BOOST_AUTO_TEST_CASE(inconsistent_rows)
{
auto path = writeFile("wrong2.csv", "1;2\n;3");
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(path, ';'),
std::invalid_argument,
checkMessage("wrong2.csv: columns have inconsistent number of rows"));
}

BOOST_AUTO_TEST_CASE(not_a_number)
{
auto path = writeFile("wrong.csv", "1;2\nXy;3");
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(path, ';'),
std::invalid_argument,
checkMessage("wrong.csv: \"Xy\" is not a number"));
}

BOOST_AUTO_TEST_CASE(empty_line)
{
auto path = writeFile("wrong.csv", "1;2\n\n3;4");
BOOST_CHECK_EXCEPTION(TimeSeriesSetImporter::importFromFile(path, ';'),
std::invalid_argument,
checkMessage("wrong.csv: empty line in the middle of the file"));
}

BOOST_AUTO_TEST_CASE(empty_file)
{
auto path = writeFile("empty", "");
auto path = writeFile("empty.csv", "");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path);
BOOST_CHECK_EQUAL(timeSeriesSet.name(), "empty");
BOOST_CHECK_EXCEPTION(timeSeriesSet.getData(0, 0),
Expand All @@ -77,7 +109,7 @@ BOOST_AUTO_TEST_CASE(empty_file)

BOOST_AUTO_TEST_CASE(one_line_one_column)
{
auto path = writeFile("one", "138.583");
auto path = writeFile("one.tsv", "138.583");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path);
BOOST_CHECK_EQUAL(timeSeriesSet.name(), "one");
BOOST_CHECK_EQUAL(timeSeriesSet.getData(0, 0), 138.583);
Expand All @@ -91,7 +123,7 @@ BOOST_AUTO_TEST_CASE(one_line_one_column)

BOOST_AUTO_TEST_CASE(one_line_two_columns)
{
auto path = writeFile("one_by_two", "123,456.789");
auto path = writeFile("one_by_two.csv", "123,456.789\n");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path, ',');
BOOST_CHECK_EQUAL(timeSeriesSet.name(), "one_by_two");
BOOST_CHECK_EQUAL(timeSeriesSet.getData(0, 0), 123);
Expand All @@ -106,7 +138,7 @@ BOOST_AUTO_TEST_CASE(one_line_two_columns)

BOOST_AUTO_TEST_CASE(two_lines_one_column)
{
auto path = writeFile("two_by_one", "123\n20");
auto path = writeFile("two_by_one.tsv", "123\n20");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path);
BOOST_CHECK_EQUAL(timeSeriesSet.name(), "two_by_one");
BOOST_CHECK_EQUAL(timeSeriesSet.getData(0, 0), 123);
Expand All @@ -121,8 +153,8 @@ BOOST_AUTO_TEST_CASE(two_lines_one_column)

BOOST_AUTO_TEST_CASE(two_lines_two_columns)
{
auto path = writeFile("two_by_two", "1;2\n3;4");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path, ';');
auto path = writeFile("two_by_two.csv", "1\t2\n3\t4");
auto timeSeriesSet = TimeSeriesSetImporter::importFromFile(path, '\t');
BOOST_CHECK_EQUAL(timeSeriesSet.name(), "two_by_two");
BOOST_CHECK_EQUAL(timeSeriesSet.getData(0, 0), 1);
BOOST_CHECK_EQUAL(timeSeriesSet.getData(0, 1), 3);
Expand Down Expand Up @@ -151,16 +183,16 @@ BOOST_AUTO_TEST_CASE(empty_dir)

BOOST_AUTO_TEST_CASE(one_simple_file)
{
writeFile("one", "123");
writeFile("one.tsv", "123");
auto repo = DataSeriesRepoImporter::importFromDirectory(temp_path);
BOOST_CHECK_EQUAL(repo.getDataSeries("one").name(), "one");
BOOST_CHECK_EQUAL(repo.getDataSeries("one").getData(0, 0), 123);
}

BOOST_AUTO_TEST_CASE(two_simple_files)
{
writeFile("one", "123");
writeFile("two", "456");
writeFile("one.csv", "123");
writeFile("two.tsv", "456");
auto repo = DataSeriesRepoImporter::importFromDirectory(temp_path);
BOOST_CHECK_EQUAL(repo.getDataSeries("one").name(), "one");
BOOST_CHECK_EQUAL(repo.getDataSeries("two").name(), "two");
Expand All @@ -170,9 +202,9 @@ BOOST_AUTO_TEST_CASE(two_simple_files)

BOOST_AUTO_TEST_CASE(three_small_files)
{
writeFile("gen1_p_max", "1;2;3;4\n5;6;7;8\n9;10;11;12\n13;14;15;16.17");
writeFile("gen2_p_max", "10\n20\n30\n40");
writeFile("node1_load", "20;30\n21;31\n22;32\n23;33");
writeFile("gen1_p_max.csv", "1\t2\t3\t4\n5\t6\t7\t8\n9\t10\t11\t12\n13\t14\t15\t16.17");
writeFile("gen2_p_max.tsv", "10\n20\n30\n40");
writeFile("node1_load.tsv", "20\t30\n21\t31\n22\t32\n23\t33");
auto repo = DataSeriesRepoImporter::importFromDirectory(temp_path);

BOOST_CHECK_EQUAL(repo.getDataSeries("gen1_p_max").name(), "gen1_p_max");
Expand Down
5 changes: 3 additions & 2 deletions src/tests/src/optimisation/linear-problem-data/testLinearProblemData.cpp
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Original file line number Diff line number Diff line change
Expand Up @@ -9,14 +9,15 @@

using namespace Antares::Optimisation::LinearProblemDataImpl;

BOOST_AUTO_TEST_CASE(PbData_is_empty__asking_it_a_value_leads_to_exception)
// TODO: activate this test when we support scenario groups
/*BOOST_AUTO_TEST_CASE(PbData_is_empty__asking_it_a_value_leads_to_exception)
{
LinearProblemData linearProblemData;
std::string expected_err_msg = "Scenario group 'group name' does not exist in group repo.";
BOOST_CHECK_EXCEPTION(linearProblemData.getData("data set name", "group name", 0, 0),
std::invalid_argument,
checkMessage(expected_err_msg));
}
}*/

BOOST_AUTO_TEST_CASE(ask_to_a_simple_linearProblemData_data_it_contains___answer_ok)
{
Expand Down

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