Mention to https://github.com/jocpae/clDice for Centerline loss and metric required for this project. Run using SLURM and Singularity.
- Create an empty singularity docker
$ singularity pull docker://ubuntu- Once done, all libraries must be installed. To pursue that, we shall convert .SIF to SANDBOX, open it, and reconvert to SIF again, depicted in the following commands:
# SIF_FILE (SIF--> SANDBOX)
$ sudo singularity build --sandbox SANDBOX
# (Open and write in SANDBOX (ex. install packages) )
$ sudo singularity shell --writable SANDBOX/
# (SANDBOX-->SIF)
$ sudo singularity build SIF_FILE SANDBOX
That's all folks!