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AdvancedPythonWorkshop2025/Day6-WorkflowManagement

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Seperating Workflow Management from Data Processing

Setup

With conda:

conda env create -f environment.yml --name wshop6
conda activate wshop6

With pixi:

pixi install

Tools Covered Today

  • runpy
  • papermill
  • snakemake

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A workshop session discussing the seperation between workflow management and data processing

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