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arch-workflow

Components of the deidentified data request/download/analyze workflow for the ARCH network. Relevant to any i2b2/SHRINE networks.

For further documentation, including setup instructions, see the wiki.

Components currently available:

  • shrine-webclient-arch: A fork of the 1.22.4 SHRINE webclient with various minor improvements and bugfixes, including:
    • Graph mode is now the default result mode.
    • A bug with undefined numbers was fixed in the query report
    • Query status panel is larger (and made somewhat more user configurable.
    • Login page displays a SmartSheet with network status (ARCH-specific).
    • Beta feature: grey out "find" results in the ontology view that are already contained in folders that appear in results, and sort the results from topmost level down.
  • shrine-webclient-workflow: A fork of the 1.22.8 SHRINE webclient that has a new tab to build a detailed data request from a query and to flag that query. Also contains the added features of shrine-webclient-arch as of 11/21/2018.
  • webclient-workflow: The 1.7.09 i2b2 webclient with a plugin installed to pull detailed data requests from SHRINE, generate the detailed data, and either download it or upload it to the ARCH portal (component forthcoming).

Contributors: Stanley Boykin; Jeff Klann, PhD; Nich Wattanasin

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