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Cleaned picks.csv formatting with the csv library #11

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Cleaned picks.csv formatting with the csv library #11

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30 changes: 19 additions & 11 deletions run.py
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Original file line number Diff line number Diff line change
Expand Up @@ -13,6 +13,7 @@
import threading
import multiprocessing
from functools import partial
import csv

def read_args():

Expand Down Expand Up @@ -461,8 +462,10 @@ def pred_fn(args, data_reader, figure_dir=None, result_dir=None, log_dir=None):
else:
num_pool = 2
pool = multiprocessing.Pool(num_pool)
fclog = open(os.path.join(log_dir, args.fpred+'.csv'), 'w')
fclog.write("fname,itp,tp_prob,its,ts_prob\n")

with open(os.path.join(log_dir, args.fpred + '.csv'), 'w') as fclog:
writer = csv.writer(fclog)
writer.writerow(["fname", "itp", "tp_prob", "its", "ts_prob"])

if args.input_mseed:

Expand Down Expand Up @@ -499,10 +502,13 @@ def pred_fn(args, data_reader, figure_dir=None, result_dir=None, log_dir=None):
figure_dir = figure_dir,
args=args),
range(len(pred_batch)))
for i in range(len(fname_batch)):
row = "{},{},{},{},{}".format(fname_batch[i].decode(), picks_batch[i][0][0], picks_batch[i][0][1],
picks_batch[i][1][0], picks_batch[i][1][1]).replace("\n", "")
fclog.write(row+"\n")

with open(os.path.join(log_dir, args.fpred + '.csv'), 'a') as fclog:
writer = csv.writer(fclog)
for i in range(len(fname_batch)):
row = [fname_batch[i].decode(), picks_batch[i][0][0].tolist(), picks_batch[i][0][1].tolist(),
picks_batch[i][1][0].tolist(), picks_batch[i][1][1].tolist()]
writer.writerow(row)

if last_batch:
break
Expand All @@ -524,11 +530,13 @@ def pred_fn(args, data_reader, figure_dir=None, result_dir=None, log_dir=None):
figure_dir = figure_dir,
args=args),
range(len(pred_batch)))
for i in range(len(fname_batch)):
row = "{},{},{},{},{}".format(fname_batch[i].decode(), picks_batch[i][0][0], picks_batch[i][0][1],
picks_batch[i][1][0], picks_batch[i][1][1]).replace("\n", "")
fclog.write(row+"\n")
# fclog.flush()

with open(os.path.join(log_dir, args.fpred + '.csv'), 'a') as fclog:
writer = csv.writer(fclog)
for i in range(len(fname_batch)):
row = [fname_batch[i].decode(), picks_batch[i][0][0].tolist(), picks_batch[i][0][1].tolist(),
picks_batch[i][1][0].tolist(), picks_batch[i][1][1].tolist()]
writer.writerow(row)

fclog.close()
print("Done")
Expand Down