chore: 🔨 update db for datacite v4.5

.vscode/extensions.json

@@ -12,7 +12,6 @@
     "bradlc.vscode-tailwindcss",
     "austenc.tailwind-docs",
     "kamikillerto.vscode-colorize",
-    "wix.vscode-import-cost",
     "DavidAnson.vscode-markdownlint",
     "csstools.postcss"
   ]

mermaid/mmd/dataset-metadata-er.mmd

@@ -40,12 +40,6 @@ erDiagram
         timestamp created_at
     }
 
-    DATASET_RECORD_KEYS {
-        string dataset_id PK,FK "DATASET.id"
-        string keys_type "NULLABLE"
-        string keys_details
-    }
-
     DATASET_DE_IDENT_LEVEL {
         string dataset_id PK,FK "DATASET.id"
         string type "NULLABLE"
@@ -119,68 +113,39 @@ erDiagram
         timestamp created_at
     }
 
+    DATASET_PUBLISHER {
+        string dataset_id PK,FK "DATASET.id"
+        string publisher
+        string identifier
+        string identifier_scheme
+        string scheme_uri
+    }
+
      DATASET_OTHER {
         string dataset_id PK,FK "DATASET.id"
         string resource_type
         string language "NULLABLE"
         string managing_organization_name
         string managing_organization_ror_id
-        string publisher
         string standards_followed "Used for the README file"
         string acknowledgement "Used for the README file"
         string[] size
+        string[] format
     }
 
-    DATASET_RELATED_ITEM {
+    DATASET_RELATED_IDENTIFIER {
         string id PK "UUIDv4"
         string dataset_id FK "DATASET.id"
-        string type "NULLABLE"
-        string relation_type "NULLABLE"
-        timestamp created_at
-    }
-
-    DATASET_RELATED_ITEM_IDENTIFIER {
-        string id PK "UUIDv4"
-        string related_item_id FK "DATASET_RELATED_ITEM.id"
         string identifier
-        string type "NULLABLE"
-        string metadata_scheme 
-        string scheme_uri 
-        string scheme_type 
-        timestamp created_at
-    }
-
-    DATASET_RELATED_ITEM_CONTRIBUTOR {
-        string id PK "UUIDv4"
-        string related_item_id FK "DATASET_RELATED_ITEM.id"
-        string name
-        string name_type "NULLABLE"
-        boolean creator "true if creator, false if contributor"
-        string contributor_type "NULLABLE | required if contributor"
-        timestamp created_at
-    }
-
-    DATASET_RELATED_ITEM_TITLE {
-        string id PK "UUIDv4"
-        string related_item_id FK "DATASET_RELATED_ITEM.id"
-        string title
-        string type "NULLABLE"
+        string identifier_type "NULLABLE"
+        string relation_type "NULLABLE"
+        string related_metadata_scheme
+        string scheme_uri
+        string scheme_type
+        string resource_type "NULLABLE"
         timestamp created_at
     }
 
-    DATASET_RELATED_ITEM_OTHER {
-        string related_item_id PK,FK "DATASET_RELATED_ITEM.id"
-        timestamp publication_year "NULLABLE"
-        string volume
-        string issue
-        string number_value
-        string number_type "NULLABLE"
-        string first_page
-        string last_page
-        string publisher
-        string edition
-    }
-
     DATASET_HEALTHSHEET {
         string id PK "UUIDv4"
         string dataset_id FK "DATASET.id"
@@ -198,23 +163,15 @@ erDiagram
     DATASET_DESCRIPTION }o--|| DATASET : "has description"
     DATASET_CONTRIBUTOR }o--|| DATASET : "has contributor"
     DATASET_DATE }o--|| DATASET : "has date"
-    DATASET_RECORD_KEYS ||--|| DATASET : "has record key"
     DATASET_DE_IDENT_LEVEL ||--|| DATASET : "has deidentification level"
     DATASET_CONSENT ||--|| DATASET : "has consent"
 
     DATASET ||--o{ DATASET_SUBJECT : "has subject"
     DATASET ||--|| DATASET_ACCESS : "has access"
     DATASET ||--o{ DATASET_RIGHTS : "has rights"
     DATASET ||--o{ DATASET_FUNDER : "has funder"
+    DATASET ||--o{ DATASET_RELATED_IDENTIFIER : "has related identifiers"
+    DATASET ||--|| DATASET_PUBLISHER : "has publisher"
     DATASET ||--|| DATASET_OTHER : "has other details"
-    DATASET ||--o{ DATASET_RELATED_ITEM : "has related item"
-
-    DATASET_HEALTHSHEET ||--|| DATASET : "has healthsheet"
-
-    DATASET_RELATED_ITEM ||--o{ DATASET_RELATED_ITEM_IDENTIFIER : "has identifier"
-    DATASET_RELATED_ITEM ||--o{ DATASET_RELATED_ITEM_CONTRIBUTOR : "has contributor"
-    DATASET_RELATED_ITEM ||--o{ DATASET_RELATED_ITEM_TITLE : "has title"
-    DATASET_RELATED_ITEM ||--|| DATASET_RELATED_ITEM_OTHER : "has other details"
-
 
-
+    DATASET_HEALTHSHEET ||--|| DATASET : "has healthsheet"

src/assets/data/form.json

@@ -145,16 +145,6 @@
       "value": "Methods",
       "disabled": false
     },
-    {
-      "label": "Series Information",
-      "value": "SeriesInformation",
-      "disabled": false
-    },
-    {
-      "label": "Table of Contents",
-      "value": "TableOfContents",
-      "disabled": false
-    },
     {
       "label": "Technical Info",
       "value": "TechnicalInfo",
@@ -455,34 +445,7 @@
       "description": "From PubMed, an 'investigator' is an individual (e.g., collaborator or investigator) who is not an author of a paper but is listed as a member of a collective/corporate group that is an author of the paper."
     }
   ],
-  "datasetRecordKeysTypeOptions": [
-    {
-      "label": "Not Known",
-      "value": "NotKnown",
-      "description": "No clear information available about the record keys in use."
-    },
-    {
-      "label": "Anonymised",
-      "value": "Anonymised",
-      "description": "Data controller or manager describes dataset as `anonymised`, in their interpretation of the term."
-    },
-    {
-      "label": "Pseudonymised",
-      "value": "Pseudonymised",
-      "description": "Data controller or manager describes dataset as `pseudonymised`, in their interpretation of the term."
-    },
-    {
-      "label": "Identifiable",
-      "value": "Identifiable",
-      "description": "Data controller or manager describes dataset as `identifiable`, in their interpretation of the term."
-    }
-  ],
   "datasetDeIdentTypeOptions": [
-    {
-      "label": "Not Known",
-      "value": "NotKnown",
-      "description": "No clear information available about the de-identification, if any, applied to the data."
-    },
     {
       "label": "No De-identification",
       "value": "NoDeIdentification",
@@ -500,11 +463,6 @@
     }
   ],
   "datasetConsentTypeOptions": [
-    {
-      "label": "Not Known",
-      "value": "NotKnown",
-      "description": "No clear information available about consent for secondary use, or if any exists."
-    },
     {
       "label": "No Explicit Consent",
       "value": "NoExplicitConsent",
@@ -747,7 +705,7 @@
       "description": "If selected, supply a value for ResourceType."
     }
   ],
-  "datasetRelatedItemRelationTypeOptions": [
+  "datasetRelatedIdentifierRelationTypeOptions": [
     {
       "label": "IsCitedBy",
       "value": "IsCitedBy",
@@ -917,24 +875,16 @@
       "label": "IsObsoletedBy",
       "value": "IsObsoletedBy",
       "description": "Indicates A is replaced by B"
-    }
-  ],
-  "datasetRelatedItemNumberTypeOptions": [
-    {
-      "label": "Article",
-      "value": "Article"
-    },
-    {
-      "label": "Chapter",
-      "value": "Chapter"
     },
     {
-      "label": "Report",
-      "value": "Report"
+      "const": "IsCollectedBy",
+      "value": "IsCollectedBy",
+      "description": "Indicates A is collected by B"
     },
     {
-      "label": "Other",
-      "value": "Other"
+      "const": "Collects",
+      "value": "Collects",
+      "description": "Indicates A collects B"
     }
   ],
   "studyMetadataIdentificationPrimaryIdentifierTypeOptions": [