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The difference between input gene symbol name and geneID #269

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lxy04 opened this issue Jun 8, 2024 · 1 comment
Open

The difference between input gene symbol name and geneID #269

lxy04 opened this issue Jun 8, 2024 · 1 comment

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@lxy04
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lxy04 commented Jun 8, 2024

Hi,
we know that a geneName may map different geneID(ensemble ), when we use clusterprofiler, the input always geneID, but gseapy is symbol name, I want to know how it effect the go(enrichr) result.

Thanks!

@zqfang
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zqfang commented Jun 10, 2024

enrichr required gene symbol as input. geneID won't work for enrichr.

You can use geneID, as long as your gmt file are all geneIDs, too.

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