results

Repository Directory

results: Contains results files

• neon_capture_recapture_results_2024-04-11.RData. Output from MSSCR model (Step 1). File too large for GitHub: download link
• faith_plot_phylo.rds Results from alternative Step 2 model (phylogenetic diversity, local community) that includes phylogenetic dependence
• faith_plot_posterior.csv CSV with posterior distribution of plot-level phylogenetic diversity
• faith_site_phylo.rds Results from alternative Step 2 model (phylogenetic diversity, metacommunity) that includes phylogenetic dependence
• faith_site_posterior.csv CSV with posterior distribution of site-level phylogenetic diversity
• n_plot_phylo.rds Results from alternative Step 2 model (total abundance, local community) that includes phylogenetic dependence
• n_plot_posterior.csv CSV with posterior distribution of plot-level total abundance
• n_site_phylo.rds Results from alternative Step 2 model (total abundance, metacommunity) that includes phylogenetic dependence
• n_site_posterior.csv CSV with posterior distribution of site-level total abundance
• pd_plot_phylo.rds Results from alternative Step 2 model (Peromyscus dominance, local community) that includes phylogenetic dependence
• pd_plot_posterior.csv CSV with posterior distribution of plot-level Peromyscus dominance
• pd_site_phylo.rds Results from alternative Step 2 model (Peromyscus dominance, metacommunity) that includes phylogenetic dependence
• pd_site_posterior.csv CSV with posterior distribution of site-level Peromyscus dominance
• rodent_pathogen_faith_plot_2024-08-21.RData Results from Step 2 model (phylogenetic diversity, local community)
• rodent_pathogen_faith_site_2024-09-16.RData Results from Step 2 model (phylogenetic diversity, metacommunity)
• rodent_pathogen_n_plot_2024-04-18.RData Results from Step 2 model (total abundance, local community)
• rodent_pathogen_n_site_2024-09-16.RData Results from Step 2 model (total abundance, metacommunity)
• rodent_pathogen_pd_plot_2024-04-19.RData Results from Step 2 model (Peromyscus dominance, local community)
• rodent_pathogen_pd_site_2024-09-16.RData Results from Step 2 model (Peromyscus dominance, metacommunity)
• rodent_pathogen_shan_plot_2024-04-18.RData Results from Step 2 model (Shannon diversity, local community)
• rodent_pathogen_shan_site_2024-09-16.RData Results from Step 2 model (Shannon diversity, metacommunity)
• rodent_pathogen_sr_plot_2024-04-18.RData Results from Step 2 model (species richness, local community)
• rodent_pathogen_sr_site_2024-09-16.RData Resutls from Step 2 model (species richness, metacommunity)
• shan_plot_phylo.rds Results from alternative Step 2 model (Shannon diversity, local community) that includes phylogenetic dependence
• shan_plot_posterior.csv CSV with posterior distribution of plot-level Shannon diversity
• shan_site_phylo.rds Results from alternative Step 2 model (Shannon diversity, metacommunity) that includes phylogenetic dependence
• shan_site_posterior.csv CSV with posterior distribution of site-level Shannon diversity
• sr_plot_phylo.rds Results from alternative Step 2 model (species richness, local community) that includes phylogenetic dependence
• sr_plot_posterior.csv CSV with posterior distribution of plot-level species richness
• sr_site_phylo.rds Results from alternative Step 2 model (species richness, metacommunity) that includes phylogenetic dependence
• sr_site_posterior.csv CSV with posterior distribution of site-level species richness