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Issues list

Incorrect handling of hdf5 file for repeated runs of RiboCode
#59 opened Dec 4, 2023 by jdcla
👍 2
can't locate attribute: psites_number
#40 opened May 9, 2022 by trum994
1 👍 1
Error when writing transcripts to file
#20 opened Sep 16, 2019 by ewallace
1
GTF specification should include start and stop codons
#21 opened Sep 16, 2019 by ewallace
1
Detect C-terminal extensions with RiboCode
#23 opened Jan 20, 2020 by marcasriv
Alternative Start Codons
#25 opened Apr 14, 2020 by qidi-yang
1
Error in GTFupdate
#30 opened Nov 15, 2021 by lbwfff
1
psite HDF5 file is saved in the wrong location
#31 opened Jan 6, 2022 by Roleren
2
ValueError: Can't transform the genomic interval, please check!
#35 opened Mar 10, 2022 by z626093820
1
Read counts issues
#36 opened Mar 12, 2022 by tan5251
2
ImportError: cannot import name 'PPoly' from partially initialized module 'scipy.interpolate' (most likely due to a circular import) (/home/zhai2/miniconda3/lib/python3.8/site-packages/scipy/interpolate/__init__.py)
#37 opened Mar 23, 2022 by z626093820
1
Generating figures with matplotlib when DISPLAY variable is undefined or invalid help wanted
#1 opened May 3, 2017 by zhengtaoxiao
@zhengtaoxiao
ImportError: No module named Tkinter help wanted
#3 opened Jun 28, 2017 by zhengtaoxiao
2
Whether multiple mapping affect ribocode result
#42 opened May 12, 2022 by Hilarialy
1
error in metaplots step
#43 opened May 27, 2022 by hugch2020
1
请问关于ORF预测结果中‘Psites_frame0_RPKM’代表什么意思？
#45 opened Jun 8, 2022 by z626093820
4
Empty "transcripts_cds.txt" file
#46 opened Jun 8, 2022 by huguanjing
1
remove PCR duplicate
#47 opened Jul 21, 2022 by yx-xu
2
Question on adjusted P values reported in collapsed output
#51 opened Aug 16, 2022 by mt1022
2
How does RiboCode deal with Harringtonine treated data?
#67 opened Mar 25, 2025 by danielrebib
ModuleNotFoundError: No module named 'fasta'
#53 opened Mar 27, 2023 by fulaibaowang
7
ValueError: unsupported pickle protocol: 5 in metaplots
#54 opened Apr 28, 2023 by z626093820
1
psites_number table is not generated with v1.2.15
#55 opened May 18, 2023 by hsinyenwu
1
pickle.load() AttributeError: 'module' object has no attribute 'Gene' help wanted
#2 opened Jun 23, 2017 by ghost
5
RiboCode_onestep crashes when calling detectORF
#41 opened May 11, 2022 by trum994
1
ProTip! What’s not been updated in a month: updated:<2025-02-28.