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Iain Bancarz
committed
Fixed missing words in copyright and disclaimer text
1 parent 6d65362 commit 5e24e45

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+269
-248
lines changed

‎Gtc.cpp

+20-19
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@@ -9,26 +9,27 @@
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//
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// Author: Jennifer Liddle <[email protected], [email protected]>
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//
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// Redistribution and use in source and binary forms, with or without modification,
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// are permitted provided that the following conditions are met:
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// 1. Redistributions of source code must retain the above copyright notice, this
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// list of conditions and the following disclaimer.
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// 2. Redistributions in binary form must reproduce the above copyright notice,
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// this list of conditions and the following disclaimer in the documentation and/or
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// other materials provided with the distribution.
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// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
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// may be used to endorse or promote products derived from software without specific
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// prior written permission.
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// Redistribution and use in source and binary forms, with or without
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// modification, are permitted provided that the following conditions are met:
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// 1. Redistributions of source code must retain the above copyright notice,
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// this list of conditions and the following disclaimer.
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// 2. Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// 3. Neither the name of Genome Research Ltd nor the names of the
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// contributors may be used to endorse or promote products derived from
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// software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
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// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
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// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
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// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
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// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
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// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
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// THE POSSIBILITY OF SUCH DAMAGE.
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// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
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// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
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// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
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// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
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// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
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// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
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// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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//
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#include "Gtc.h"

‎Gtc.h

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@@ -10,26 +10,29 @@
1010

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// Author: Jennifer Liddle <[email protected], [email protected]>
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//
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// Redistribution and use in source and binary forms, with or without modification,
14-
// are permitted provided that the following conditions are met:
15-
// 1. Redistributions of source code must retain the above copyright notice, this
16-
// list of conditions and the following disclaimer.
17-
// 2. Redistributions in binary form must reproduce the above copyright notice,
18-
// this list of conditions and the following disclaimer in the documentation and/or
19-
// other materials provided with the distribution.
20-
// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
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// may be used to endorse or promote products derived from software without specific
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// prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
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// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
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// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
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// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
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// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
29-
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
30-
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
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// THE POSSIBILITY OF SUCH DAMAGE.
14+
// Redistribution and use in source and binary forms, with or without
15+
// modification, are permitted provided that the following conditions are met:
16+
// 1. Redistributions of source code must retain the above copyright notice,
17+
// this list of conditions and the following disclaimer.
18+
// 2. Redistributions in binary form must reproduce the above copyright
19+
// notice, this list of conditions and the following disclaimer in the
20+
// documentation and/or other materials provided with the distribution.
21+
// 3. Neither the name of Genome Research Ltd nor the names of the
22+
// contributors may be used to endorse or promote products derived from
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// software without specific prior written permission.
24+
//
25+
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
26+
// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
27+
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
28+
// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
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// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
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// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
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// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
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// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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//
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#ifndef _GTC_H

‎Manifest.cpp

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#include "Manifest.h"
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// Author: Jennifer Liddle <[email protected], [email protected]>, Iain Bancarz <[email protected]>
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//
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// Redistribution and use in source and binary forms, with or without modification,
12-
// are permitted provided that the following conditions are met:
13-
// 1. Redistributions of source code must retain the above copyright notice, this
14-
// list of conditions and the following disclaimer.
15-
// 2. Redistributions in binary form must reproduce the above copyright notice,
16-
// this list of conditions and the following disclaimer in the documentation and/or
17-
// other materials provided with the distribution.
18-
// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
19-
// may be used to endorse or promote products derived from software without specific
20-
// prior written permission.
21-
//
22-
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
23-
// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
24-
// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
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// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
26-
// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
27-
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
28-
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
29-
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
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// THE POSSIBILITY OF SUCH DAMAGE.
11+
// Redistribution and use in source and binary forms, with or without
12+
// modification, are permitted provided that the following conditions are met:
13+
// 1. Redistributions of source code must retain the above copyright notice,
14+
// this list of conditions and the following disclaimer.
15+
// 2. Redistributions in binary form must reproduce the above copyright
16+
// notice, this list of conditions and the following disclaimer in the
17+
// documentation and/or other materials provided with the distribution.
18+
// 3. Neither the name of Genome Research Ltd nor the names of the
19+
// contributors may be used to endorse or promote products derived from
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// software without specific prior written permission.
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//
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// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
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// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
24+
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
25+
// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
26+
// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
27+
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
28+
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
29+
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
30+
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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#include <iostream>

‎Manifest.h

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//
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// Author: Jennifer Liddle <[email protected], [email protected]>
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//
10-
// Redistribution and use in source and binary forms, with or without modification,
11-
// are permitted provided that the following conditions are met:
12-
// 1. Redistributions of source code must retain the above copyright notice, this
13-
// list of conditions and the following disclaimer.
14-
// 2. Redistributions in binary form must reproduce the above copyright notice,
15-
// this list of conditions and the following disclaimer in the documentation and/or
16-
// other materials provided with the distribution.
17-
// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
18-
// may be used to endorse or promote products derived from software without specific
19-
// prior written permission.
10+
// Redistribution and use in source and binary forms, with or without
11+
// modification, are permitted provided that the following conditions are met:
12+
// 1. Redistributions of source code must retain the above copyright notice,
13+
// this list of conditions and the following disclaimer.
14+
// 2. Redistributions in binary form must reproduce the above copyright
15+
// notice, this list of conditions and the following disclaimer in the
16+
// documentation and/or other materials provided with the distribution.
17+
// 3. Neither the name of Genome Research Ltd nor the names of the
18+
// contributors may be used to endorse or promote products derived from
19+
// software without specific prior written permission.
2020
//
21-
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
22-
// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
23-
// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
24-
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
25-
// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
26-
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
27-
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
28-
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
29-
// THE POSSIBILITY OF SUCH DAMAGE.
21+
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
22+
// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
23+
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
24+
// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
25+
// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
26+
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
27+
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
28+
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
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// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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#ifndef _MANIFEST_H

‎QC.h

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//
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// Author: Iain Bancarz <[email protected]>
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//
9-
// Redistribution and use in source and binary forms, with or without modification,
10-
// are permitted provided that the following conditions are met:
11-
// 1. Redistributions of source code must retain the above copyright notice, this
12-
// list of conditions and the following disclaimer.
13-
// 2. Redistributions in binary form must reproduce the above copyright notice,
14-
// this list of conditions and the following disclaimer in the documentation and/or
15-
// other materials provided with the distribution.
16-
// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
17-
// may be used to endorse or promote products derived from software without specific
18-
// prior written permission.
9+
// Redistribution and use in source and binary forms, with or without
10+
// modification, are permitted provided that the following conditions are met:
11+
// 1. Redistributions of source code must retain the above copyright notice,
12+
// this list of conditions and the following disclaimer.
13+
// 2. Redistributions in binary form must reproduce the above copyright
14+
// notice, this list of conditions and the following disclaimer in the
15+
// documentation and/or other materials provided with the distribution.
16+
// 3. Neither the name of Genome Research Ltd nor the names of the
17+
// contributors may be used to endorse or promote products derived from
18+
// software without specific prior written permission.
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//
20-
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
21-
// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
22-
// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
23-
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
24-
// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
25-
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
26-
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
27-
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
28-
// THE POSSIBILITY OF SUCH DAMAGE.
20+
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
21+
// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
22+
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
23+
// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
24+
// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
25+
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
26+
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
27+
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
28+
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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#ifndef _QC_H

‎Sim.cpp

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//
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// Author: Jennifer Liddle <[email protected], [email protected]>
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//
11-
// Redistribution and use in source and binary forms, with or without modification,
12-
// are permitted provided that the following conditions are met:
13-
// 1. Redistributions of source code must retain the above copyright notice, this
14-
// list of conditions and the following disclaimer.
15-
// 2. Redistributions in binary form must reproduce the above copyright notice,
16-
// this list of conditions and the following disclaimer in the documentation and/or
17-
// other materials provided with the distribution.
18-
// 3. Neither the name of the Genome Research Ltd nor the names of its contributors
19-
// may be used to endorse or promote products derived from software without specific
20-
// prior written permission.
11+
12+
// Redistribution and use in source and binary forms, with or without
13+
// modification, are permitted provided that the following conditions are met:
14+
// 1. Redistributions of source code must retain the above copyright notice,
15+
// this list of conditions and the following disclaimer.
16+
// 2. Redistributions in binary form must reproduce the above copyright
17+
// notice, this list of conditions and the following disclaimer in the
18+
// documentation and/or other materials provided with the distribution.
19+
// 3. Neither the name of Genome Research Ltd nor the names of the
20+
// contributors may be used to endorse or promote products derived from
21+
// software without specific prior written permission.
2122
//
22-
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR WARRANTIES,
23-
// INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
24-
// FOR A PARTICULAR PURPOSE ARE DISCLAIMED. EVENT SHALL GENOME RESEARCH LTD. BE LIABLE
25-
// FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES
26-
// (INCLUDING, LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE,
27-
// DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF
28-
// LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
29-
// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF
30-
// THE POSSIBILITY OF SUCH DAMAGE.
23+
// THIS SOFTWARE IS PROVIDED BY THE AUTHOR ``AS IS'' AND ANY EXPRESS OR
24+
// IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE IMPLIED WARRANTIES
25+
// OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE ARE DISCLAIMED.
26+
// IN NO EVENT SHALL GENOME RESEARCH LTD. BE LIABLE FOR ANY DIRECT, INDIRECT,
27+
// INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
28+
// BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF
29+
// USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY
30+
// THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT
31+
// (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF
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// THIS SOFTWARE, EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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//
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#include "Sim.h"

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