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# --------------------------------------------
# CITATION file created with {cffr} R package
# See also: https://docs.ropensci.org/cffr/
# --------------------------------------------
cff-version: 1.2.0
message: 'To cite package "MultiAssayExperiment" in publications use:'
type: software
license: Artistic-2.0
title: 'MultiAssayExperiment: Software for the integration of multi-omics experiments
in Bioconductor'
version: 1.37.4
doi: 10.1158/0008-5472.CAN-17-0344
abstract: Harmonize data management of multiple experimental assays performed on an
overlapping set of specimens. It provides a familiar Bioconductor user experience
by extending concepts from SummarizedExperiment, supporting an open-ended mix of
standard data classes for individual assays, and allowing subsetting by genomic
ranges or rownames. Facilities are provided for reshaping data into wide and long
formats for adaptability to graphing and downstream analysis.
authors:
- family-names: Ramos
given-names: Marcel
email: marcel.ramos@sph.cuny.edu
orcid: https://orcid.org/0000-0002-3242-0582
- family-names: Morgan
given-names: Martin
- family-names: Carey
given-names: Vincent J
- family-names: Waldron
given-names: Levi
email: lwaldron.research@gmail.com
preferred-citation:
type: article
title: Software For The Integration Of Multi-Omics Experiments In Bioconductor
authors:
- family-names: Ramos
given-names: Marcel
email: marcel.ramos@sph.cuny.edu
orcid: https://orcid.org/0000-0002-3242-0582
- family-names: Schiffer
given-names: Lucas
- family-names: Re
given-names: Angela
- family-names: Azhar
given-names: Rimsha
- family-names: Basunia
given-names: Azfar
- family-names: Rodriguez Cabrera
given-names: Carmen
- family-names: Chan
given-names: Tiffany
- family-names: Chapman
given-names: Philip
- family-names: Davis
given-names: Sean
- family-names: Gomez-Cabrero
given-names: David
- family-names: Culhane
given-names: Aedin C.
- family-names: Haibe-Kains
given-names: Benjamin
- family-names: Hansen
given-names: Kasper
- family-names: Kodali
given-names: Hanish
- family-names: Louis
given-names: Marie S
- family-names: Mer
given-names: Arvind S
- family-names: Reister
given-names: Markus
- family-names: Morgan
given-names: Martin
- family-names: Carey
given-names: Vincent J
- family-names: Waldron
given-names: Levi
email: lwaldron.research@gmail.com
journal: Cancer Research
year: '2017'
volume: '77'
issue: '21'
doi: 10.1158/0008-5472.CAN-17-0344
url: https://cancerres.aacrjournals.org/content/77/21/e39
start: e39-42
repository: https://bioconductor.org/
repository-code: https://github.com/waldronlab/MultiAssayExperiment
url: http://waldronlab.io/MultiAssayExperiment/
date-released: '2026-03-28'
contact:
- family-names: Ramos
given-names: Marcel
email: marcel.ramos@sph.cuny.edu
orcid: https://orcid.org/0000-0002-3242-0582
keywords:
- bioconductor
- bioconductor-package
- genomics
- nci-itcr
- r
- tcga
- u24ca289073
references:
- type: manual
title: 'MultiAssayExperiment: Software for the integration of multi-omics experiments
in Bioconductor'
authors:
- family-names: Ramos
given-names: Marcel
email: marcel.ramos@sph.cuny.edu
orcid: https://orcid.org/0000-0002-3242-0582
- family-names: Morgan
given-names: Martin
- family-names: Carey
given-names: Vincent J
- family-names: Waldron
given-names: Levi
email: lwaldron.research@gmail.com
year: '2026'
notes: R package version 1.37.4
url: http://waldronlab.io/MultiAssayExperiment/