dissertation.tex

% LaTeX template file for a UC Davis Mathematics Ph.D. Dissertation


% The UC Davis Dissertation Formatting Requirements can be found at
% http://www.gradstudies.ucdavis.edu/students/filing.html


% SPECIFY AN APPROPRIATE DOCUMENT CLASS WITH APPROPRIATE OPTIONS:
\documentclass[letterpaper, 12pt, oneside]{book}

    
% SPECIFY THE PAGE AND HEADER FORMATTING (which is completely a hack):
%    \usepackage[left=108pt, right=74pt, top=108pt, bottom=81pt, dvips, pdftex]{geometry}
    \usepackage[left=1in, right=1in, top=1in, bottom=1in, dvips, pdftex]{geometry}
    
    \usepackage{fancyhdr} % See this package's documentation for more
    \pagestyle{fancy}     % information about the following commands
    \renewcommand{\sectionmark}[1]{\markright{\thesection.\ #1}}

    \fancyhf{}
    \fancyhead[R]{\thepage}
    %\fancyhead[L]{\rightmark}
    \renewcommand{\headrulewidth}{0pt} % change this to put a line between
                                       % the header and the main text
    

    \setcounter{secnumdepth}{3}


    % The following command sets the name of the Bibliography:
    \renewcommand{\bibname}{References}

    % These commands allow for a bibliography for each chapter
    %%\usepackage[sort&compress,comma,square]{natbib}
%    \usepackage[round]{natbib}
%    \usepackage{chapterbib}
%    \renewcommand{\bibsection}{\section{\bibname}}
	\usepackage[]{natbib}
    \bibliographystyle{apj} % My personal style file for citations
%	\renewcommand{\bibfont}{\singlespacing}
% need this command to keep single spacing in the bibliography when using natbib

    % EXTREMELY COMMON LaTeX PACKAGES TO INCLUDE:
    \usepackage{amsmath,amsthm, amsfonts,amssymb} % For AMS Beautification
    \usepackage{braket}
%	\usepackage{graphics}
	\usepackage{graphicx}
    \usepackage{color}
%	\usepackage{psfrag} % Font replacement in ps figures
%	\usepackage{epsfig} 
    \usepackage{setspace} % For Single & Double Spacing Commands
    \usepackage{threeparttable}
    % sty files designed to get tex documents that use aastex to work in dissertation
    % copied from http://casa.colorado.edu/~danforth/comp/tex/thesistex.html
	\usepackage{deluxetable} % standalone version of aastex's deluxetable
	\usepackage{aastex_hack}
	\usepackage{mydefs}

    % Used for making an index and glossary
%    \usepackage[style=list,number=none,toc=true]{glossary}
%    \makeglossary
%    \usepackage{makeidx}
%    \makeindex

    \definecolor{darkblue}{RGB}{0,0,74}
    \usepackage[linktocpage,bookmarksnumbered,% For PDF navigation
                colorlinks=true,urlcolor=darkblue,      % and URL hyperlinks
                citecolor=darkblue,linkcolor=darkblue,      % and PDF information
                breaklinks,  %allow citations to wrap to the next line
                pdftitle={PhD Dissertation, William A Dawson}, % Insert your title
                pdfauthor={William Anthony Dawson}, % Insert your name
                pdfsubject={UC Davis Ph.D. Doctoral Thesis},%
                pdfkeywords={UC Davis Ph.D. Doctoral Thesis}]{hyperref}
    \usepackage{breakurl}

    % SOME SLIGHTLY LESS COMMON LaTeX PACKAGES TO INCLUDE 
    % (uncomment as necessary)
%     \usepackage{graphicx} % For including and formatting image files
%     \usepackage{pstricks, pst-plot} % For creating images & figures
%     \usepackage[vcentermath]{youngtab} % For typesetting Young Tableaux

    % COMPLETELY OPTIONAL LaTeX PACKAGES TO INCLUDE:
    % (uncomment as necessary)
%    \usepackage{lineno} % For Line Numbering
%     \usepackage{appendix} % For Control of Appendix Numbering & Location

    
    % DEFINE SOME USEFUL THEOREMS, ENVIRONMENTS, ETC.:
    \newtheorem{Theorem}{Theorem}[section]
    \newtheorem{Proposition}[Theorem]{Proposition}
    \newtheorem{Lemma}[Theorem]{Lemma}
    \newtheorem{Corollary}[Theorem]{Corollary}
    \theoremstyle{definition}
    \newtheorem{Definition}[Theorem]{Definition}
    \newtheorem{Example}[Theorem]{Example}
    \newtheorem{Conjecture}[Theorem]{Conjecture}
    \newtheorem{Problem}[Theorem]{Problem}
    \newtheorem{Algorithm}[Theorem]{Algorithm}
    \newtheorem{CardGame}[Theorem]{Card Game}
    \newtheorem{Strategy}[Theorem]{Strategy}
    \newtheorem{Question}[Theorem]{Question}
    \theoremstyle{remark}
    \newtheorem{Remark}[Theorem]{Remark}
    \newenvironment{Sketch}{\par\noindent{\sc Sketch of Proof}\quad}{\hfill\qed\par\smallskip}
    \newenvironment{Proof}{\par\noindent{\sc Proof}\quad}{\hfill\qed\par\smallskip}
    \newenvironment{ReuseTheorem}[2]{\par\vspace{12pt}\noindent{\bf #1~\ref{#2}$'$.}\it}{\par\vspace{12pt}}
    \newenvironment{RestateTheorem}[2]{\par\vspace{12pt}\noindent{\bf #1~\ref{#2}.}\it}{\par\vspace{12pt}}

    % DETERMINE HOW EXTENSIVELY TO NUMBER EQUATIONS AND FIGURES:
    \numberwithin{equation}{chapter}
    \numberwithin{figure}{chapter}
    
    
    % DEFINE NEW ANY COMMANDS (for your own convenience):
    \newcommand{\n}{\vspace{12pt}} % for typesetting line breaks with 12
                                   % Postscript points of extra whitespace
      
    \newcommand{\newchapter}[3] % for typesetting new chapters with the
    {                           % correct initial page numbering style
      % Arguments: (#1) Short name for chapter, which is used in 
      %            any running headers
      %            (#2) Medium length name for chapter, which is
      %            used in the table of contents
      %            (#3) Long name for chapter, which is typeset at 
      %            the starting the chapter
      \chapter[#2]{#3}
      \chaptermark{#1}
%      \thispagestyle{myheadings}
    }

   % This statement dictates which chapters get compiled. Comment a
   % line if you do not wish it to be in the output. The final draft
   % should have everything uncommented, unless you have opted to not
   % include a Glossary or Index.
    \includeonly{
      Front/title,
      Front/copyright,
      Front/dedication,
      Front/toc,
      Front/tof,
      Front/lot,
      Abstract/intext,
      Acknowledgements/acknowledgements,
      Chapter1/chapter1,
      Chapter2/chapter2,
      Chapter3/chapter3,
      Chapter4/chapter4,
      Chapter5/chapter5,
      Appendix1/appendix1,
      Appendix2/appendix2
%      Glossary/glossary,
%      Index/index
    }

\begin{document}
    
    % Toggle commenting the following command out in order to toggle 
    % the inclusion of line numbering (this requires the ``lineno'' 
    % package to be includes above):
%    \linenumbers
    
    % The following commands produce page numbering at the bottom
    % center using roman numerals per UC Davis requirements for the
    % front matter of the dissertation:
    \pagenumbering{roman}
    \pagestyle{plain}

       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Title Page


    \include{Front/title}

       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Copyright Page
        
    % The following commands create a copyright notice page. This 
    % page can be deleted if you would prefer to not include it.
        

    \include{Front/copyright}
    
       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Dedication Page
    
    % The following command inserts a nice dedication to whomever you
    % feel is appropriate.  This page can be deleted if you would
    % prefer to not include it.
    \include{Front/dedication}

    % The following command produces double-spaced lines for the
    % remainder of the document:
    \doublespacing
    
       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Table of Contents
    
    \include{Front/toc}
       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Table of Figures
    
    \include{Front/tof}

    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- List of Tables
    
    \include{Front/lot}

    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Abstract
    
    % Toggle the commenting of the following command in order to
    % include a page number.  The purpose of this is to allow the
    % create an autonomous Abstract Page per University Requirements.
    % 
    % Note that the page numbering style for the autonomous Abstract 
    % Page needs to be adjusted. See the Grad Studies website.

    \include{Abstract/intext}
    
    \newpage
    
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- Acknowledgements

    % the vspace command forces the title up a bit higher 

    \include{Acknowledgements/acknowledgements}
    
    \newpage
       
    % %-----------------------------------------------------------------------
    % 
    % %----------------------------------------------------------- NEW PAGE --
    %
    % % -- BEGIN TEXT OF THESIS

    % The following commands produce page numbering at the top right
    % using arabic numerals per UC Davis requirements for the main
    % text of the dissertation:
%    \pagestyle{fancy}
	\cfoot{\thepage}
    \pagenumbering{arabic}


    % %-----------------------------------------------------------------------
    % 
    % %-------------------------------------------------------- NEW CHAPTER --
    %
    % % -- Chapter 1
    
    \include{Chapter1/chapter1}

        % Either type your Introduction here or input a file 
        % containing it using the ``\input'' or ``\include'' command.
        
        % You will probably want to split your chapter up into several
        % sections (with each section possibly even split up into
        % subsections), each of which can either be written directly
        % in this file or input from an external file as above.
        %
        % Suggested sections for your introduction include a general 
        % overview (with historical motivation as appropriate) and a 
        % summary of your main results. E.g.:
        
    % %-----------------------------------------------------------------------
    % 
    % %-------------------------------------------------------- NEW CHAPTER --
    %
    % % -- Chapter 2


    \include{Chapter2/chapter2}

    % %-----------------------------------------------------------------------
    % 
    % %-------------------------------------------------------- NEW CHAPTER --
    %
    % % -- Chapter 3

    \include{Chapter3/chapter3}
        
    % %-----------------------------------------------------------------------
    % 
    % %-------------------------------------------------------- NEW CHAPTER --
    %
    % % -- Chapter 4

    \include{Chapter4/chapter4}
        
    % %-----------------------------------------------------------------------
    % 
    % %-------------------------------------------------------- NEW CHAPTER --
    %
    % % -- Chapter 5

    \include{Chapter5/chapter5}


    % % ----------------------------------------------------------------------
    % 
    %% % -- Appendices
    %
    \appendix
    %
    %
    %% % ----------------------------------------------------------------------
    %% 
    %% %------------------------------------------------------- NEW APPENDIX --
    %%
    %% % -- Appendix 1
    %
    %
    \include{Appendix1/appendix1}
    
    \include{Appendix2/appendix2}
    %
    %
    %% % ----------------------------------------------------------------------
    %% 
    %% %----------------------------------------------------------- GLOSSARY --
    %%
    %% % -- Glossary
    %
    %\include{Glossary/glossary}
    %
    %
    %% % ----------------------------------------------------------------------
    %% 
    %% %-------------------------------------------------------------- INDEX --
    %%
    %% % -- Index
    %
    %\include{Index/index}

\bibliography{dissertation}{}

\end{document}