VCell HDF5 File not properly formatted for BSTS specifications

[CodeByDrescher]

Problem

For the past many weeks, BSTS has been reporting we are not meeting their standards, and not executing correctly.
After much investigation, it was determined that BSTS was not in the wrong (see #647), and the problem lied within VCell.

Specifically, VCell is not producing the expected HDF5 results file with the proper format. With recent changes to how our HDF5 results file is generated (previously "outsourced" to a python library, currently done "in house" within VCell), this is very plausible.

[CodeByDrescher]

Updates: The HDF5 file VCell produces is now nearly identical in fields to previously generated versions. However, BSTS still complains...Turns out, Biosimulations has incorrect documentation regarding how their HDF5 should be formatted. The source code of BSTS asks for (at least some) different information that what the document claims is needed. Fixed the obvious issue, but there may be more problems hidden by faulty online documentation and lightly documented source code.