nf-core-westest/modules.json at main · vincenthhu/nf-core-westest · GitHub

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{
    "name": "nf-core/westest",
    "homePage": "https://github.com/nf-core/westest",
    "repos": {
        "nf-core/modules": {
            "bcftools/norm": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "bedtools/intersect": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "bedtools/sort": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "bwa/mem": {
                "git_sha": "1765225042d40cf01eb9469ea95bf6d0f6810937"
            },
            "bwamem2/mem": {
                "git_sha": "1765225042d40cf01eb9469ea95bf6d0f6810937"
            },
            "cnvkit/batch": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "custom/dumpsoftwareversions": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "fastqc": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "gatk4/applybqsr": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/baserecalibrator": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/bedtointervallist": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/calculatecontamination": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/createsomaticpanelofnormals": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/filtermutectcalls": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/genomicsdbimport": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/genotypegvcfs": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/getpileupsummaries": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/haplotypecaller": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/indexfeaturefile": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/learnreadorientationmodel": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gatk4/mutect2": {
                "git_sha": "598d7abdb2a8df1aa3471c48d9186a9e3465983f"
            },
            "gunzip": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "multiqc": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "picard/collectmultiplemetrics": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "picard/markduplicates": {
                "git_sha": "0d1e21686a586447b7592e40da9b3a7cdeedf03c"
            },
            "picard/sortsam": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "qualimap/bamqc": {
                "git_sha": "d473a247d2e0c619b0df877ea19d9a5a98c8e3c8"
            },
            "salmon/quant": {
                "git_sha": "d473a247d2e0c619b0df877ea19d9a5a98c8e3c8"
            },
            "samtools/faidx": {
                "git_sha": "e0aa89141ffecb5f54d230f7ea46de242b74e084"
            },
            "samtools/index": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "samtools/merge": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "samtools/sort": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "samtools/stats": {
                "git_sha": "e751e5040af57e1b4e06ed4e0f3efe6de25c1683"
            },
            "tabix/bgziptabix": {
                "git_sha": "e22966ce74340cb671576143e5fdbbd71670cffa"
            },
            "tabix/tabix": {
                "git_sha": "20d8250d9f39ddb05dfb437603aaf99b5c0b2b41"
            },
            "tiddit/cov": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "trimgalore": {
                "git_sha": "9d0cad583b9a71a6509b754fdf589cbfbed08961"
            },
            "ucsc/wigtobigwig": {
                "git_sha": "30e64becaa1e6c807a09a49a6d3d457ff3cf7251"
            }
        }
    }
}