From 62a466f81109caf55e528813b8799596fd530990 Mon Sep 17 00:00:00 2001 From: daymegr Date: Wed, 3 Nov 2021 15:57:07 +0100 Subject: [PATCH] use the right gene means file and remove tsne data file --- inst/templates/SCOneSample.Rmd | 15 +-------------- 1 file changed, 1 insertion(+), 14 deletions(-) diff --git a/inst/templates/SCOneSample.Rmd b/inst/templates/SCOneSample.Rmd index 4c37bc192..9088a2153 100644 --- a/inst/templates/SCOneSample.Rmd +++ b/inst/templates/SCOneSample.Rmd @@ -438,25 +438,12 @@ The iSEE shiny app can be accessed through this link [iSEE explorer](`r {lastPro ##### Mean expression of every gene across the cells in each cluster -[geneMeanPerCluster](gene_means_per_cluster.txt) - -##### Mean expression of every gene across all the cells - -[geneMeans](gene_means.txt) +[geneMeans](gene_means.tsv) ##### Positive markers of each cluster [posMarkers](pos_markers.tsv) -```{r, results='asis', eval = param$all2allMarkers} -cat("##### Differential expressed genes from clusters paired comparisons") -cat("\n") -cat("[all2allMarkers](all2allMarkers.tsv)") -``` - -##### Coordinates of every cell on the TSNE - -[tSNE](tSNE_data.tsv) ##### The final Single Cell Experiment Object is [here](sce_h5)