diff --git a/jsons/parameters.json b/jsons/parameters.json index 7d164fc..1f975b4 100644 --- a/jsons/parameters.json +++ b/jsons/parameters.json @@ -2994,6 +2994,38 @@ }, "value_type": "bool" }, + { + "default_value": "euclidean", + "description": "distance metric", + "key_translations": { + "align_files_dbscan_style_1": "metric", + "align_scans_dbscan_style_1": "metric", + "umap_style_1": "metric", + "ursgal_style_1": "cluster_distance_metric" + }, + "name": "cluster_distance_metric", + "tag": [], + "triggers_rerun": true, + "value_translations": {}, + "value_type": "str" + }, + { + "default_value": 0.1, + "description": "minimum distance to neighbour", + "key_translations": { + "align_files_dbscan_style_1": "eps", + "align_scans_dbscan_style_1": "eps", + "umap_style_1": "min_distance", + "ursgal_style_1": "cluster_min_distance" + }, + "name": "cluster_min_distance", + "tag": [ + "cluster" + ], + "triggers_rerun": true, + "value_translations": {}, + "value_type": "int" + }, { "default_value": 2, "description": "number of components to use for embedding", @@ -4586,21 +4618,6 @@ "value_translations": {}, "value_type": "dict" }, - { - "default_value": "euclidean", - "description": "distance metric", - "key_translations": { - "align_files_dbscan_style_1": "metric", - "align_scans_dbscan_style_1": "metric", - "umap_style_1": "linkage", - "ursgal_style_1": "distance_metric" - }, - "name": "distance_metric", - "tag": [], - "triggers_rerun": true, - "value_translations": {}, - "value_type": "str" - }, { "default_value": false, "description": "Engine creates an own decoy database. Not recommended, because a target decoy database should be generated independently from the search engine, e.g. by using the uNode generate_target_decoy_1_0_0", @@ -10643,23 +10660,6 @@ "value_translations": {}, "value_type": "int" }, - { - "default_value": 0.1, - "description": "minimum distance to neighbour", - "key_translations": { - "align_files_dbscan_style_1": "eps", - "align_scans_dbscan_style_1": "eps", - "umap_style_1": "min_distance", - "ursgal_style_1": "min_distance" - }, - "name": "min_distance", - "tag": [ - "cluster" - ], - "triggers_rerun": true, - "value_translations": {}, - "value_type": "int" - }, { "default_value": 0.001, "description": " Set minmal abundance for elements used when building isotopologue library ",