Skip to content

Commit 7a0d451

Browse files
samuelbhartisamuelbharti
committed
Update renv.lock
1 parent b657d75 commit 7a0d451

1 file changed

Lines changed: 96 additions & 34 deletions

File tree

‎renv.lock‎

Lines changed: 96 additions & 34 deletions
Original file line numberDiff line numberDiff line change
@@ -4,23 +4,23 @@
44
"Repositories": [
55
{
66
"Name": "BioCsoft",
7-
"URL": "https://bioconductor.posit.co//packages/3.22/bioc"
7+
"URL": "https://bioconductor.org/packages/3.22/bioc"
88
},
99
{
1010
"Name": "BioCann",
11-
"URL": "https://bioconductor.posit.co//packages/3.22/data/annotation"
11+
"URL": "https://bioconductor.org/packages/3.22/data/annotation"
1212
},
1313
{
1414
"Name": "BioCexp",
15-
"URL": "https://bioconductor.posit.co//packages/3.22/data/experiment"
15+
"URL": "https://bioconductor.org/packages/3.22/data/experiment"
1616
},
1717
{
1818
"Name": "BioCworkflows",
19-
"URL": "https://bioconductor.posit.co//packages/3.22/workflows"
19+
"URL": "https://bioconductor.org/packages/3.22/workflows"
2020
},
2121
{
2222
"Name": "BioCbooks",
23-
"URL": "https://bioconductor.posit.co//packages/3.22/books"
23+
"URL": "https://bioconductor.org/packages/3.22/books"
2424
},
2525
{
2626
"Name": "CRAN",
@@ -83,7 +83,11 @@
8383
"Repository": "https://bioc-release.r-universe.dev",
8484
"NeedsCompilation": "no",
8585
"Author": "The Bioconductor Dev Team [aut], Hervé Pagès [aut, cre] (ORCID: <https://orcid.org/0009-0002-8272-4522>), Laurent Gatto [ctb] (ORCID: <https://orcid.org/0000-0002-1520-2268>), Nathaniel Hayden [ctb], James Hester [ctb], Wolfgang Huber [ctb], Michael Lawrence [ctb], Martin Morgan [ctb] (ORCID: <https://orcid.org/0000-0002-5874-8148>), Valerie Obenchain [ctb]",
86-
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>"
86+
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
87+
"RemoteType": "repository",
88+
"RemoteUrl": "https://github.com/bioc/BiocGenerics",
89+
"RemoteRef": "RELEASE_3_22",
90+
"RemoteSha": "16cf16df6e7c4a0f76e959bf858c5c0990543522"
8791
},
8892
"BiocManager": {
8993
"Package": "BiocManager",
@@ -116,6 +120,28 @@
116120
"Maintainer": "Marcel Ramos <marcel.ramos@sph.cuny.edu>",
117121
"Repository": "CRAN"
118122
},
123+
"BiocVersion": {
124+
"Package": "BiocVersion",
125+
"Version": "3.22.0",
126+
"Source": "Bioconductor",
127+
"Title": "Set the appropriate version of Bioconductor packages",
128+
"Description": "This package provides repository information for the appropriate version of Bioconductor.",
129+
"Authors@R": "c( person(\"Martin\", \"Morgan\", email = \"martin.morgan@roswellpark.org\", role = \"aut\"), person(\"Marcel\", \"Ramos\", email = \"marcel.ramos@sph.cuny.edu\", role = \"ctb\"), person(\"Bioconductor\", \"Package Maintainer\", email = \"maintainer@bioconductor.org\", role = c(\"ctb\", \"cre\")))",
130+
"biocViews": "Infrastructure",
131+
"Depends": [
132+
"R (>= 4.4.0)"
133+
],
134+
"License": "Artistic-2.0",
135+
"Encoding": "UTF-8",
136+
"RoxygenNote": "6.0.1",
137+
"Repository": "https://bioc-release.r-universe.dev",
138+
"RemoteUrl": "https://github.com/bioc/BiocVersion",
139+
"RemoteRef": "RELEASE_3_22",
140+
"RemoteSha": "fea53ac938311018c7513d2339cdd5f928cd72c5",
141+
"NeedsCompilation": "no",
142+
"Author": "Martin Morgan [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [ctb, cre]",
143+
"Maintainer": "Bioconductor Package Maintainer <maintainer@bioconductor.org>"
144+
},
119145
"ComplexHeatmap": {
120146
"Package": "ComplexHeatmap",
121147
"Version": "2.26.1",
@@ -179,7 +205,11 @@
179205
"Repository": "https://bioc-release.r-universe.dev",
180206
"NeedsCompilation": "no",
181207
"Author": "Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)",
182-
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>"
208+
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>",
209+
"RemoteType": "repository",
210+
"RemoteUrl": "https://github.com/bioc/ComplexHeatmap",
211+
"RemoteRef": "RELEASE_3_22",
212+
"RemoteSha": "880562b42a0cf2c190b461c045198463232a6305"
183213
},
184214
"DT": {
185215
"Package": "DT",
@@ -259,7 +289,11 @@
259289
"RoxygenNote": "7.3.2",
260290
"Repository": "https://bioc-release.r-universe.dev",
261291
"NeedsCompilation": "no",
262-
"Author": "Kevin Blighe [aut], Jared Andrews [cre, ctb] (ORCID: <https://orcid.org/0000-0002-0780-6248>), Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut]"
292+
"Author": "Kevin Blighe [aut], Jared Andrews [cre, ctb] (ORCID: <https://orcid.org/0000-0002-0780-6248>), Sharmila Rana [aut], Emir Turkes [ctb], Benjamin Ostendorf [ctb], Andrea Grioni [ctb], Myles Lewis [aut]",
293+
"RemoteType": "repository",
294+
"RemoteUrl": "https://github.com/bioc/EnhancedVolcano",
295+
"RemoteRef": "RELEASE_3_22",
296+
"RemoteSha": "dae20c75382d8a65a781bc9ae5fbe6a756401e86"
263297
},
264298
"GetoptLong": {
265299
"Package": "GetoptLong",
@@ -292,7 +326,8 @@
292326
"NeedsCompilation": "no",
293327
"Author": "Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)",
294328
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>",
295-
"Repository": "CRAN"
329+
"Repository": "CRAN",
330+
"Encoding": "UTF-8"
296331
},
297332
"GlobalOptions": {
298333
"Package": "GlobalOptions",
@@ -368,7 +403,11 @@
368403
"Repository": "https://bioc-release.r-universe.dev",
369404
"NeedsCompilation": "yes",
370405
"Author": "Hervé Pagès [aut, cre], Patrick Aboyoun [aut], Michael Lawrence [aut]",
371-
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>"
406+
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
407+
"RemoteType": "repository",
408+
"RemoteUrl": "https://github.com/bioc/IRanges",
409+
"RemoteRef": "RELEASE_3_22",
410+
"RemoteSha": "964a2904e15d5352da6bcb1e0f55fcf62a09ce59"
372411
},
373412
"InteractiveComplexHeatmap": {
374413
"Package": "InteractiveComplexHeatmap",
@@ -439,11 +478,15 @@
439478
"URL": "https://github.com/jokergoo/InteractiveComplexHeatmap",
440479
"BugReports": "https://github.com/jokergoo/InteractiveComplexHeatmap/issues",
441480
"License": "MIT + file LICENSE",
442-
"Config/pak/sysreqs": "libfontconfig1-dev libfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev libxml2-dev perl zlib1g-dev",
481+
"Config/pak/sysreqs": "cmake libfontconfig1-dev libfreetype6-dev libfribidi-dev make libharfbuzz-dev libicu-dev libpng-dev libuv1-dev libxml2-dev perl zlib1g-dev",
443482
"Repository": "https://bioc-release.r-universe.dev",
444483
"NeedsCompilation": "no",
445484
"Author": "Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)",
446-
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>"
485+
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>",
486+
"RemoteType": "repository",
487+
"RemoteUrl": "https://github.com/bioc/InteractiveComplexHeatmap",
488+
"RemoteRef": "RELEASE_3_22",
489+
"RemoteSha": "ef9965da8caf9dee3874dad6d48d13c44a8993ea"
447490
},
448491
"PKI": {
449492
"Package": "PKI",
@@ -465,7 +508,8 @@
465508
"SystemRequirements": "OpenSSL library and headers (openssl-dev or similar)",
466509
"NeedsCompilation": "yes",
467510
"Author": "Simon Urbanek [aut, cre, cph] (https://urbanek.nz, ORCID: <https://orcid.org/0000-0003-2297-1732>)",
468-
"Repository": "CRAN"
511+
"Repository": "CRAN",
512+
"Encoding": "UTF-8"
469513
},
470514
"R6": {
471515
"Package": "R6",
@@ -508,7 +552,8 @@
508552
"Description": "Provides color schemes for maps (and other graphics) designed by Cynthia Brewer as described at http://colorbrewer2.org.",
509553
"License": "Apache License 2.0",
510554
"NeedsCompilation": "no",
511-
"Repository": "CRAN"
555+
"Repository": "CRAN",
556+
"Encoding": "UTF-8"
512557
},
513558
"Rcpp": {
514559
"Package": "Rcpp",
@@ -571,7 +616,8 @@
571616
"NeedsCompilation": "yes",
572617
"Author": "Dirk Eddelbuettel [aut, cre] (<https://orcid.org/0000-0001-6419-907X>), Mark Gillard [aut] (Author of 'toml++' header library)",
573618
"Maintainer": "Dirk Eddelbuettel <edd@debian.org>",
574-
"Repository": "CRAN"
619+
"Repository": "CRAN",
620+
"Encoding": "UTF-8"
575621
},
576622
"S4Vectors": {
577623
"Package": "S4Vectors",
@@ -611,11 +657,15 @@
611657
"Repository": "https://bioc-release.r-universe.dev",
612658
"NeedsCompilation": "yes",
613659
"Author": "Hervé Pagès [aut, cre], Michael Lawrence [aut], Patrick Aboyoun [aut], Aaron Lun [ctb], Beryl Kanali [ctb] (Converted vignettes from Sweave to RMarkdown)",
614-
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>"
660+
"Maintainer": "Hervé Pagès <hpages.on.github@gmail.com>",
661+
"RemoteType": "repository",
662+
"RemoteUrl": "https://github.com/bioc/S4Vectors",
663+
"RemoteRef": "RELEASE_3_22",
664+
"RemoteSha": "ae25d08aa5b02dca895179b5b6ac52656c4547f3"
615665
},
616666
"S7": {
617667
"Package": "S7",
618-
"Version": "0.2.1-1",
668+
"Version": "0.2.2",
619669
"Source": "Repository",
620670
"Title": "An Object Oriented System Meant to Become a Successor to S3 and S4",
621671
"Authors@R": "c( person(\"Object-Oriented Programming Working Group\", role = \"cph\"), person(\"Davis\", \"Vaughan\", role = \"aut\"), person(\"Jim\", \"Hester\", role = \"aut\", comment = c(ORCID = \"0000-0002-2739-7082\")), person(\"Tomasz\", \"Kalinowski\", role = \"aut\"), person(\"Will\", \"Landau\", role = \"aut\"), person(\"Michael\", \"Lawrence\", role = \"aut\"), person(\"Martin\", \"Maechler\", role = \"aut\", comment = c(ORCID = \"0000-0002-8685-9910\")), person(\"Luke\", \"Tierney\", role = \"aut\"), person(\"Hadley\", \"Wickham\", , \"hadley@posit.co\", role = c(\"aut\", \"cre\"), comment = c(ORCID = \"0000-0003-4757-117X\")) )",
@@ -671,7 +721,8 @@
671721
"NeedsCompilation": "no",
672722
"Author": "Marc Schwartz [aut, cre], Various authors for Perl modules listed in each .pm file. [aut]",
673723
"Maintainer": "Marc Schwartz <marc_schwartz@me.com>",
674-
"Repository": "CRAN"
724+
"Repository": "CRAN",
725+
"Encoding": "UTF-8"
675726
},
676727
"askpass": {
677728
"Package": "askpass",
@@ -717,7 +768,8 @@
717768
"URL": "https://www.rforge.net/base64enc",
718769
"BugReports": "https://github.com/s-u/base64enc/issues",
719770
"NeedsCompilation": "yes",
720-
"Repository": "CRAN"
771+
"Repository": "CRAN",
772+
"Encoding": "UTF-8"
721773
},
722774
"bslib": {
723775
"Package": "bslib",
@@ -846,7 +898,8 @@
846898
"NeedsCompilation": "no",
847899
"Author": "Zuguang Gu [aut, cre] (ORCID: <https://orcid.org/0000-0002-7395-8709>)",
848900
"Maintainer": "Zuguang Gu <guzuguang@suat-sz.edu.cn>",
849-
"Repository": "CRAN"
901+
"Repository": "CRAN",
902+
"Encoding": "UTF-8"
850903
},
851904
"cli": {
852905
"Package": "cli",
@@ -1329,7 +1382,8 @@
13291382
"NeedsCompilation": "no",
13301383
"Author": "Folashade Daniel [cre], Microsoft Corporation [aut, cph], Steve Weston [aut], Dan Tenenbaum [ctb]",
13311384
"Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
1332-
"Repository": "CRAN"
1385+
"Repository": "CRAN",
1386+
"Encoding": "UTF-8"
13331387
},
13341388
"dplyr": {
13351389
"Package": "dplyr",
@@ -1416,16 +1470,15 @@
14161470
"rmarkdown"
14171471
],
14181472
"VignetteBuilder": "knitr",
1473+
"Author": "Wajid Jawaid [aut, cre]",
1474+
"Maintainer": "Wajid Jawaid <wajid.jawaid@gmail.com>",
14191475
"RemoteType": "github",
14201476
"RemoteHost": "api.github.com",
14211477
"RemoteRepo": "enrichR",
14221478
"RemoteUsername": "wjawaid",
14231479
"RemotePkgRef": "wjawaid/enrichR",
14241480
"RemoteRef": "HEAD",
1425-
"RemoteSha": "79fad70a8c1c1ae2150025d616de434aa2bef05b",
1426-
"NeedsCompilation": "no",
1427-
"Author": "Wajid Jawaid [aut, cre]",
1428-
"Maintainer": "Wajid Jawaid <wajid.jawaid@gmail.com>"
1481+
"RemoteSha": "79fad70a8c1c1ae2150025d616de434aa2bef05b"
14291482
},
14301483
"evaluate": {
14311484
"Package": "evaluate",
@@ -1574,7 +1627,8 @@
15741627
"NeedsCompilation": "no",
15751628
"Author": "Folashade Daniel [cre], Hong Ooi [ctb], Rich Calaway [ctb], Microsoft [aut, cph], Steve Weston [aut]",
15761629
"Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
1577-
"Repository": "CRAN"
1630+
"Repository": "CRAN",
1631+
"Encoding": "UTF-8"
15781632
},
15791633
"fs": {
15801634
"Package": "fs",
@@ -2170,7 +2224,8 @@
21702224
"NeedsCompilation": "no",
21712225
"Author": "Folashade Daniel [cre], Revolution Analytics [aut, cph], Steve Weston [aut]",
21722226
"Maintainer": "Folashade Daniel <fdaniel@microsoft.com>",
2173-
"Repository": "CRAN"
2227+
"Repository": "CRAN",
2228+
"Encoding": "UTF-8"
21742229
},
21752230
"jose": {
21762231
"Package": "jose",
@@ -2387,7 +2442,8 @@
23872442
"stats",
23882443
"graphics"
23892444
],
2390-
"Repository": "CRAN"
2445+
"Repository": "CRAN",
2446+
"Encoding": "UTF-8"
23912447
},
23922448
"later": {
23932449
"Package": "later",
@@ -2455,7 +2511,8 @@
24552511
"NeedsCompilation": "yes",
24562512
"Author": "Hadley Wickham [aut, cre], RStudio [cph]",
24572513
"Maintainer": "Hadley Wickham <hadley@rstudio.com>",
2458-
"Repository": "CRAN"
2514+
"Repository": "CRAN",
2515+
"Encoding": "UTF-8"
24592516
},
24602517
"lifecycle": {
24612518
"Package": "lifecycle",
@@ -2622,7 +2679,8 @@
26222679
"URL": "https://github.com/HenrikBengtsson/matrixStats",
26232680
"BugReports": "https://github.com/HenrikBengtsson/matrixStats/issues",
26242681
"RoxygenNote": "7.3.2",
2625-
"Repository": "CRAN"
2682+
"Repository": "CRAN",
2683+
"Encoding": "UTF-8"
26262684
},
26272685
"memoise": {
26282686
"Package": "memoise",
@@ -2992,7 +3050,8 @@
29923050
"URL": "https://www.rforge.net/png/",
29933051
"BugReports": "https://github.com/s-u/png/issues/",
29943052
"NeedsCompilation": "yes",
2995-
"Repository": "CRAN"
3053+
"Repository": "CRAN",
3054+
"Encoding": "UTF-8"
29963055
},
29973056
"promises": {
29983057
"Package": "promises",
@@ -3302,7 +3361,8 @@
33023361
"URL": "https://github.com/alexcb/rjson",
33033362
"License": "GPL-2",
33043363
"Repository": "CRAN",
3305-
"NeedsCompilation": "yes"
3364+
"NeedsCompilation": "yes",
3365+
"Encoding": "UTF-8"
33063366
},
33073367
"rlang": {
33083368
"Package": "rlang",
@@ -3596,7 +3656,8 @@
35963656
"Description": "Functions for plotting graphical shapes such as ellipses, circles, cylinders, arrows, ...",
35973657
"License": "GPL (>= 3)",
35983658
"NeedsCompilation": "no",
3599-
"Repository": "CRAN"
3659+
"Repository": "CRAN",
3660+
"Encoding": "UTF-8"
36003661
},
36013662
"shiny": {
36023663
"Package": "shiny",
@@ -4514,7 +4575,8 @@
45144575
"License": "GPL (>= 2)",
45154576
"Repository": "CRAN",
45164577
"NeedsCompilation": "no",
4517-
"Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]"
4578+
"Author": "David B. Dahl [aut], David Scott [aut, cre], Charles Roosen [aut], Arni Magnusson [aut], Jonathan Swinton [aut], Ajay Shah [ctb], Arne Henningsen [ctb], Benno Puetz [ctb], Bernhard Pfaff [ctb], Claudio Agostinelli [ctb], Claudius Loehnert [ctb], David Mitchell [ctb], David Whiting [ctb], Fernando da Rosa [ctb], Guido Gay [ctb], Guido Schulz [ctb], Ian Fellows [ctb], Jeff Laake [ctb], John Walker [ctb], Jun Yan [ctb], Liviu Andronic [ctb], Markus Loecher [ctb], Martin Gubri [ctb], Matthieu Stigler [ctb], Robert Castelo [ctb], Seth Falcon [ctb], Stefan Edwards [ctb], Sven Garbade [ctb], Uwe Ligges [ctb]",
4579+
"Encoding": "UTF-8"
45184580
},
45194581
"yaml": {
45204582
"Package": "yaml",

0 commit comments

Comments
 (0)