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README.md

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@@ -185,54 +185,54 @@ $ tree -a ptc-explorer/
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├── user_interface/ <- UI components for each page
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│ ├── cite_us_ui.R <- Citation information page layout
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│ ├── contact_ui.R <- Team information page layout
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│ ├── developer_guide_ui.R <- Developer documentation page layout
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│ ├── developer_guide_ui.R <- Developer documentation page layout
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│ ├── download_ui.R <- Data download page layout
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│ ├── gene_search_ui.R <- Gene search page layout
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│ ├── home_ui.R <- Home/landing page layout
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│ ├── rna_downstream_ui.R <- RNA downstream analysis page layout
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│ ├── rna_fusion_ui.R <- RNA fusion analysis page layout
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│ ├── rna_downstream_ui.R <- RNA downstream analysis page layout
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│ ├── rna_fusion_ui.R <- RNA fusion analysis page layout
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│ ├── user_guide_ui.R <- User documentation page layout
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│ ├── wes_additional_ui.R <- Additional WES analysis page layout
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│ ├── wes_additional_ui.R <- Additional WES analysis page layout
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│ └── wes_variant_ui.R <- WES variant analysis page layout
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├── modules/ <- Reusable UI and server modules
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│ ├── dt_mod.R <- Enhanced DataTable components
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│ ├── enrichr_mod.R <- Pathway enrichment analysis
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│ ├── fusion_filter_mod.R <- RNA fusion filtering
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│ ├── gene_info_mod.R <- Gene annotation services
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│ ├── gene_search_mod.R <- Gene search functionality
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│ ├── meta_plots_mod.R <- Clinical metadata visualization
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│ ├── profile_mod.R <- Team photo and social media display
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│ ├── reactable_mod.R <- Modern interactive tables
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│ ├── variant_filter_mod.R <- Genomic variant filtering
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│ └── volcano_mod.R <- Interactive volcano plots
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├── data/ <- Sample datasets
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│ ├── app_data_pack_*.rds <- Main application datasets
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│ └── ptc_onco_obj_list_*.rds <- Oncoplot object data
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├── R/ <- Utility functions
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│ ├── load_components.R <- Component loading functions
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│ └── utils.R <- General utility functions
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├── docs/ <- Documentation files
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│ ├── DYNAMIC_DATA_LOADING.md <- Dynamic data loading guide
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│ ├── LINTING_GUIDE.md <- Code linting and formatting guide
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│ ├── MODULES_COMPONENTS.md <- Module and component reference
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│ ├── TECHNICAL_REFERENCE.md <- Developer technical reference
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│ └── USER_GUIDE.md <- Comprehensive user guide
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├── www/ <- Static web assets
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│ ├── css/ <- Stylesheets
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│ ├── img/ <- Images and figures
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│ └── js/ <- JavaScript files
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├── docker/ <- Docker build helper scripts
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│ ├── install_bioc.R <- Installs Bioconductor packages
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│ ├── install_cran.R <- Installs CRAN packages
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│ └── install_github.R <- Installs GitHub packages
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└── Dockerfile <- For containerization
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├── modules/ <- Reusable UI and server modules
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│ ├── dt_mod.R <- Enhanced DataTable components
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│ ├── enrichr_mod.R <- Pathway enrichment analysis
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│ ├── fusion_filter_mod.R <- RNA fusion filtering
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│ ├── gene_info_mod.R <- Gene annotation services
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│ ├── gene_search_mod.R <- Gene search functionality
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│ ├── meta_plots_mod.R <- Clinical metadata visualization
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│ ├── profile_mod.R <- Team photo and social media display
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│ ├── reactable_mod.R <- Modern interactive tables
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│ ├── variant_filter_mod.R <- Genomic variant filtering
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│ └── volcano_mod.R <- Interactive volcano plots
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├── data/ <- Sample datasets
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│ ├── app_data_pack_*.rds <- Main application datasets
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│ └── ptc_onco_obj_list_*.rds <- Oncoplot object data
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├── R/ <- Utility functions
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│ ├── load_components.R <- Component loading functions
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│ └── utils.R <- General utility functions
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├── docs/ <- Documentation files
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│ ├── DYNAMIC_DATA_LOADING.md <- Dynamic data loading guide
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│ ├── LINTING_GUIDE.md <- Code linting and formatting guide
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│ ├── MODULES_COMPONENTS.md <- Module and component reference
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│ ├── TECHNICAL_REFERENCE.md <- Developer technical reference
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│ └── USER_GUIDE.md <- Comprehensive user guide
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├── www/ <- Static web assets
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│ ├── css/ <- Stylesheets
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│ ├── img/ <- Images and figures
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│ └── js/ <- JavaScript files
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├── docker/ <- Docker build helper scripts
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│ ├── install_bioc.R <- Installs Bioconductor packages
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│ ├── install_cran.R <- Installs CRAN packages
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│ └── install_github.R <- Installs GitHub packages
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└── Dockerfile <- For containerization
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```
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## Contributing

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