improve system tests robustness #17

	name: Commit check

	on:
	push:
	pull_request:
	branches:
	- main

	defaults:
	run:
	# micromamba activation
	shell: bash -l -eo pipefail {0}

	jobs:
	files-check:
	runs-on: [ubuntu-latest]
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	- name: Create build environment
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: ./environment-dev.yml
	environment-name: test_env
	- name: Run precommit
	run: \|
	pre-commit run --all-files

	run-test:
	runs-on: [ubuntu-latest]
	steps:
	- name: Checkout repository
	uses: actions/checkout@v4
	- name: Create build environment
	uses: mamba-org/setup-micromamba@v1
	with:
	environment-file: ./environment-dev.yml
	environment-name: test_env
	- name: Test with pytest
	run: \|
	python -m pytest

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