bedtools merge bug?

[phiweger]

Hi Torsten!

I just tried to give phastaf a quick spin via conda install -c bioconda phastaf but then ran into this:

... stuff happening ...

[phastaf] Running: (bedtools merge -i diamond.coords.bed -d 2000 -c 1 -o count > phage.bed) 2>&1 | sed 's/^/[bedtools] /' | tee -a phastaf.log
[bedtools]
[bedtools] *****
[bedtools] ***** ERROR: Requested column 1, but database file diamond.coords.bed only has fields 1 - 0.
[phastaf] Wrote: phage.bed
[phastaf] Walltime used: 0 min 7 sec
[phastaf] Found a bug in phastaf? Post it at https://github.com/tseemann/phastaf/issues
[phastaf] Done.

Any idea what could be the problem?