Add Compat bounds, remove ReverseDiff from tests, bump LogDensityProb… (#68)

* Add Compat bounds, remove ReverseDiff from tests, bump LogDensityProblems.

* docs version bumps

* remove manifest

Author: tpapp

.travis.yml

@@ -7,6 +7,7 @@ julia:
   - 1.0
   - 1.1
   - 1.2
+  - 1.3
   - nightly
 matrix:
   allow_failures:

CHANGELOG.md

@@ -1,5 +1,9 @@
 # Unreleased
 
+# 0.3.9
+
+- follow up changes in for LogDensityProblems
+
 # 0.3.8
 
 - add UnitSimplex ([#56], thanks @scheidan)

Manifest.toml

@@ -1,7 +1,7 @@
 name = "TransformVariables"
 uuid = "84d833dd-6860-57f9-a1a7-6da5db126cff"
 authors = ["Tamas K. Papp <[email protected]>"]
-version = "0.3.8"
+version = "0.3.9"
 
 [deps]
 ArgCheck = "dce04be8-c92d-5529-be00-80e4d2c0e197"
@@ -14,18 +14,22 @@ Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
 
 [compat]
-LogDensityProblems = "^0.9.0"
+ArgCheck = "^1"
+DocStringExtensions = "^0.8"
+ForwardDiff = "^0.10"
+LogDensityProblems = "^0.10.0"
+MacroTools = "^0.5"
+Parameters = "^0.12"
 julia = "^1"
 
 [extras]
-Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c"
 LogDensityProblems = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c"
 OffsetArrays = "6fe1bfb0-de20-5000-8ca7-80f57d26f881"
 Random = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c"
-ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267"
 StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
+Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c"
 Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f"
 
 [targets]
-test = ["Flux", "LogDensityProblems", "OffsetArrays", "Random", "ReverseDiff", "StaticArrays", "Test", "Zygote"]
+test = ["Tracker", "LogDensityProblems", "OffsetArrays", "Random", "StaticArrays", "Test", "Zygote"]

Project.toml

@@ -2,4 +2,4 @@
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 
 [compat]
-Documenter = "~0.23"
+Documenter = "~0.24"

docs/Project.toml

@@ -1,13 +1,19 @@
 using Documenter, TransformVariables
 
-DocMeta.setdocmeta!(TransformVariables, :DocTestSetup, :(using TransformVariables); recursive=true)
+DocMeta.setdocmeta!(TransformVariables, :DocTestSetup,
+                    :(using TransformVariables); recursive=true)
+
 makedocs(
     modules = [TransformVariables],
     format = Documenter.HTML(; prettyurls = get(ENV, "CI", nothing) == "true"),
-    sitename = "TransformVariables.jl",
     clean = true,
+    sitename = "TransformVariables.jl",
+    authors = "Tamás K. Papp",
     checkdocs = :exports,
     pages = Any["index.md", "internals.md"]
 )
 
-deploydocs(repo = "github.com/tpapp/TransformVariables.jl.git")
+deploydocs(
+    repo = "github.com/tpapp/TransformVariables.jl.git",
+    push_preview = true
+)

docs/make.jl

@@ -1,6 +1,6 @@
 # only push coverage from one bot
 get(ENV, "TRAVIS_OS_NAME", nothing)       == "linux" || exit(0)
-get(ENV, "TRAVIS_JULIA_VERSION", nothing) == "1.2"   || exit(0)
+get(ENV, "TRAVIS_JULIA_VERSION", nothing) == "1.3"   || exit(0)
 
 using Coverage
 

test/coverage/coverage.jl

@@ -2,7 +2,7 @@ const CIENV = get(ENV, "TRAVIS", "") == "true"  || get(ENV, "CI", "") == "true"
 
 using DocStringExtensions, LinearAlgebra, LogDensityProblems, OffsetArrays, Parameters,
     Random, Test, TransformVariables, StaticArrays
-import Flux, ForwardDiff, ReverseDiff
+import Tracker, ForwardDiff
 using LogDensityProblems: logdensity, logdensity_and_gradient
 using TransformVariables:
     AbstractTransform, ScalarTransform, VectorTransform, ArrayTransform,
@@ -400,17 +400,12 @@ end
     @test v1 == v
     @test g1 ≈ g
 
-    # Flux
-    P2 = ADgradient(:Flux, P)
+    # Tracker
+    P2 = ADgradient(:Tracker, P)
     v2, g2 = @inferred logdensity_and_gradient(P2, x)
     @test v2 == v
     @test g2 ≈ g
 
-    # ReverseDiff
-    P3 = ADgradient(:ReverseDiff, P)
-    v3, g3 = @inferred logdensity_and_gradient(P3, x)
-    @test v3 == v
-    @test g3 ≈ g
 
 end