The tr.rdf file (same for the W3C API) only knows about W3C specs. As such, it does not contain the information needed to fill the obsoletedBy properties of W3C specs that got superseded by WHATWG specs. When the shortname stayed the same, the data essentially moved to whatwg.json, which seems fine, but when the shortname changed in the process, the relationship gets lost in data. Main missing links:
cors -> fetch
html5 entries -> html
xmlhttprequest entries -> xhr