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first alpha #2

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3 of 4 tasks
stemangiola opened this issue Feb 3, 2025 · 1 comment
Open
3 of 4 tasks

first alpha #2

stemangiola opened this issue Feb 3, 2025 · 1 comment
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@stemangiola
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stemangiola commented Feb 3, 2025

  • plyrxp is not the name of the package. You have plyrxp in tidyprint
    https://github.com/jtlandis/plyxp/
  • please build unit tests,
  • copy the workflows directory from sccomp repository for github action
  • Please create a print(design = "alternative_1") where you have

The header from this

> print(se0, design = "tidySummarizedExperiment")
# A SummarizedExperiment-tibble abstraction: 1,200 × 4
# Features=200 | Samples=6 | Assays=counts
   .feature .sample counts Treatment
   <chr>    <chr>    <dbl> <chr>    
 1 1        A         9.83 ChIP     
 2 2        A         9.78 ChIP     
 3 3        A         9.40 ChIP     
 4 4        A         9.16 ChIP     
 5 5        A         7.73 ChIP     
 6 6        A         9.15 ChIP     
 7 7        A         9.83 ChIP     
 8 8        A         9.55 ChIP     
 9 9        A         9.42 ChIP     
10 10       A         9.74 ChIP     
# ℹ 40 more rows
# ℹ Use `print(n = ...)` to see more rows

and the vertical separation lines from this

> print(se0, design = "plyrxp")
# A SummarizedExperiment-tibble Abstraction: 200 × 6
    .features .samples | counts | | Treatment
        <int> <chr>    |  <dbl> | | <chr>    
  1         1 A        |   9.83 | | ChIP     
  2         2 A        |   9.78 | | ChIP     
  3         3 A        |   9.40 | | ChIP     
  4         4 A        |   9.16 | | ChIP     
  5         5 A        |   7.73 | | ChIP     
  …         … …              …        …      
n-4       196 F        |   8.42 | | Input    
n-3       197 F        |   8.85 | | Input    
n-2       198 F        |   9.45 | | Input    
n-1       199 F        |   9.58 | | Input    
n         200 F        |   8.64 | | Input    
# ℹ n = 1,200
@stemangiola
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@zhanchen please see item 3 not complete

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